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BioLiP
Download all results in tab-seperated text for 19 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4fs3:A (1.8) BS02 0WE 1.3.1.39 GO:0000166 ... Q6GI75 22948878 MOAD: Ki=12.8nM
    PDBbind: -logKd/Ki=7.85, IC50=14nM
    2 4jqc:A (2.8) BS02 0WE 1.3.1.9 GO:0004318 ... P0AEK4 N/A
    3 4jqc:B (2.8) BS02 0WE 1.3.1.9 GO:0004318 ... P0AEK4 N/A
    4 4q9n:A (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    5 4q9n:B (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    6 4q9n:C (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    7 4q9n:D (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    8 4q9n:E (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    9 4q9n:F (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    10 4q9n:G (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    11 4q9n:H (1.795) BS02 0WE N/A GO:0004318 ... N/A 24958721 MOAD: ic50=0.95uM
    12 4rlh:A (2.26) BS01 0WE 1.3.1.9 GO:0004318 ... Q63SW7 N/A
    13 4rlh:B (2.26) BS01 0WE 1.3.1.9 GO:0004318 ... Q63SW7 N/A
    14 4rlh:C (2.26) BS01 0WE 1.3.1.9 GO:0004318 ... Q63SW7 N/A
    15 4rlh:D (2.26) BS01 0WE 1.3.1.9 GO:0004318 ... Q63SW7 N/A
    16 6ahe:A (2.29) BS02 0WE 1.3.1.9 GO:0000166 ... D0CAD5 32227402
    17 6ahe:B (2.29) BS02 0WE 1.3.1.9 GO:0000166 ... D0CAD5 32227402
    18 6ahe:C (2.29) BS02 0WE 1.3.1.9 GO:0000166 ... D0CAD5 32227402
    19 6ahe:D (2.29) BS02 0WE 1.3.1.9 GO:0000166 ... D0CAD5 32227402
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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