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BioLiP
Download all results in tab-seperated text for 21 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ujs:B (1.65) BS02 0V5 4.2.1.11 GO:0000015 ... P09104 22437160 MOAD: Ki=0.4mM
    2 4umb:A (2.17) BS02 0V5 2.5.1.54 GO:0003849 ... Q9K169 25245459 MOAD: Ki=99uM
    PDBbind: -logKd/Ki=4.00, Ki=99uM
    3 4umb:B (2.17) BS02 0V5 2.5.1.54 GO:0003849 ... Q9K169 25245459 MOAD: Ki=99uM
    PDBbind: -logKd/Ki=4.00, Ki=99uM
    4 4umb:C (2.17) BS02 0V5 2.5.1.54 GO:0003849 ... Q9K169 25245459 MOAD: Ki=99uM
    5 4umb:D (2.17) BS02 0V5 2.5.1.54 GO:0003849 ... Q9K169 25245459 MOAD: Ki=99uM
    6 5u4h:A (1.05) BS01 0V5 2.5.1.7 GO:0003824 ... A0A0R0VXX6 N/A
    7 5u4h:B (1.05) BS01 0V5 2.5.1.7 GO:0003824 ... A0A0R0VXX6 N/A
    8 5wi5:A (2.0) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    9 5wi5:B (2.0) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    10 5wi5:C (2.0) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    11 5wi5:D (2.0) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    12 6cn1:A (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    13 6cn1:B (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    14 6cn1:C (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    15 6cn1:D (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    16 6cn1:E (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    17 6cn1:F (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    18 6cn1:G (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    19 6cn1:H (2.75) BS02 0V5 2.5.1.7 GO:0003824 ... Q88P88 N/A
    20 6nkj:A (1.3) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    21 6nkj:B (1.3) BS01 0V5 2.5.1.7 GO:0003824 ... Q97NQ4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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