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BioLiP
Download all results in tab-seperated text for 17 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7wlm:A (2.8) BS14 0UR ? GO:0009765 ... A0A8S0G488 37082593
    2 7wlm:B (2.8) BS15 0UR ? GO:0009765 ... A0A8S0G488 37082593
    3 7wlm:C (2.8) BS15 0UR ? GO:0009765 ... A0A8S0G488 37082593
    4 8hlv:A (2.55) BS01 0UR N/A GO:0009765 ... N/A 37633266
    5 8hlv:B (2.55) BS03 0UR N/A GO:0009765 ... N/A 37633266
    6 8hlv:C (2.55) BS04 0UR N/A GO:0009765 ... N/A 37633266
    7 8hpd:A (2.74) BS01 0UR N/A GO:0009765 ... N/A 37633266
    8 8hpd:B (2.74) BS02 0UR N/A GO:0009765 ... N/A 37633266
    9 8hpd:C (2.74) BS02 0UR N/A GO:0009765 ... N/A 37633266
    10 8hq8:A (2.6) BS17 0UR N/A GO:0009765 ... N/A 37633266
    11 8hq8:A (2.6) BS18 0UR N/A GO:0009765 ... N/A 37633266
    12 8hq8:B (2.6) BS03 0UR N/A GO:0009765 ... N/A 37633266
    13 8hq8:B (2.6) BS18 0UR N/A GO:0009765 ... N/A 37633266
    14 8hq8:C (2.6) BS21 0UR N/A GO:0009765 ... N/A 37633266
    15 8hq8:D (2.6) BS17 0UR N/A GO:0009765 ... N/A 37633266
    16 8hq8:E (2.6) BS19 0UR N/A GO:0009765 ... N/A 37633266
    17 8hq8:F (2.6) BS20 0UR N/A GO:0009765 ... N/A 37633266
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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