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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ww1:A (1.95) BS02 0MK ? GO:0016853 ... L0N3Y0 25661811
    2 3ww1:A (1.95) BS03 0MK ? GO:0016853 ... L0N3Y0 25661811
    3 3ww1:B (1.95) BS03 0MK ? GO:0016853 ... L0N3Y0 25661811
    4 4dux:A (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    5 4dux:A (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    6 4dux:B (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    7 4dux:B (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    8 4dux:C (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    9 4dux:C (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    10 4dux:D (2.3) BS01 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    11 4dux:D (2.3) BS02 0MK 3.2.1.23 GO:0000287 ... P00722 23486479
    12 4q0p:A (1.93) BS02 0MK 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    13 4q0p:A (1.93) BS05 0MK 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    14 4q0u:A (1.98) BS04 0MK 5.3.1.- GO:0016853 ... Q93UQ5 24846739
    15 6tsk:A (2.3) BS02 0MK 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    16 6tsk:B (2.3) BS02 0MK 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    17 6tsk:C (2.3) BS02 0MK 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    18 6tsk:D (2.3) BS02 0MK 3.2.1.23 GO:0003824 ... L0N6M2 31877353
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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