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BioLiP
Download all results in tab-seperated text for 7 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4dhw:A (2.43) BS01 0L1 3.1.1.29 GO:0004045 ... Q9HVC3 N/A
    2 4dhw:B (2.43) BS01 0L1 3.1.1.29 GO:0004045 ... Q9HVC3 N/A
    3 4utz:A (3.3) BS03 0L1 2.3.1.- GO:0036054 ... Q6DHI5 25111069
    4 5d2j:A (1.718) BS02 0L1 4.1.1.77 GO:0003824 ... Q1XGK3 27082660
    5 5oku:A (2.07) BS01 0L1 ? N/A Q6N193 29082669 MOAD: Kd=0.55uM
    PDBbind: -logKd/Ki=6.26, Kd=0.55uM
    6 7xgl:A (2.11) BS01 0L1 N/A GO:0004514 ... N/A 36517246
    7 7xgl:B (2.11) BS01 0L1 N/A GO:0004514 ... N/A 36517246
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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