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BioLiP
Download all results in tab-seperated text for 12 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1o6i:A (1.7) BS01 0HZ 3.2.1.14 GO:0004553 ... P11797 12323074 MOAD: Ki=0.65mM
    PDBbind: -logKd/Ki=3.19, Ki=0.65mM
    2 1o6i:B (1.7) BS01 0HZ 3.2.1.14 GO:0004553 ... P11797 12323074 MOAD: Ki=0.65mM
    3 5yvk:A (1.292) BS01 0HZ ? GO:0046872 ... V5TER4 30222239
    4 5z53:A (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    5 5z53:B (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    6 5z53:C (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    7 5z53:D (1.86) BS03 0HZ ? N/A A0A1P8VSI6 30222239
    8 5z54:A (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    9 5z54:B (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    10 5z54:C (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    11 5z54:D (2.16) BS03 0HZ ? N/A A0A076NBW8 30222239
    12 6j03:A (1.48) BS01 0HZ ? GO:0046872 ... V5TER4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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