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BioLiP
Download all results in tab-seperated text for 39 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a5i:A (2.9) BS01 0GJ 3.4.21.68 GO:0004252 ... P98119 9354616
    2 1bqy:A (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    3 1bqy:B (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    4 1bui:A (2.65) BS01 0GJ 3.4.21.7 GO:0004252 ... P00747 9783753
    5 1dx5:M (2.3) BS01 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    6 1dx5:M (2.3) BS02 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    7 1dx5:M (2.3) BS03 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    8 1dx5:M (2.3) BS04 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    9 1dx5:N (2.3) BS01 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    10 1dx5:N (2.3) BS02 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    11 1dx5:N (2.3) BS03 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    12 1dx5:N (2.3) BS04 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    13 1dx5:O (2.3) BS01 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    14 1dx5:O (2.3) BS02 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    15 1dx5:O (2.3) BS03 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    16 1dx5:O (2.3) BS04 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    17 1dx5:P (2.3) BS01 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    18 1dx5:P (2.3) BS02 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    19 1dx5:P (2.3) BS03 0GJ 3.4.21.5 GO:0004252 ... P00734 10761923
    20 1lmw:B (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    21 1lmw:D (2.5) BS02 0GJ 3.4.21.73 GO:0004252 ... P00749 8591045
    22 2b8o:H (2.8) BS01 0GJ 3.4.21.21 GO:0004252 ... P08709 N/A
    23 4bxw:A (2.71) BS02 0GJ 3.4.21.6 GO:0002690 ... Q56VR3 23869089
    24 4bxw:B (2.71) BS02 0GJ 3.4.21.6 GO:0002690 ... Q56VR3 23869089
    25 5jb8:S (1.45) BS02 0GJ 3.4.21.22 GO:0004252 ... P00740 27208168
    26 5jbb:S (1.56) BS02 0GJ 3.4.21.22 GO:0004252 ... P00740 27208168
    27 5lhq:A (2.6) BS01 0GJ 3.4.21.73 GO:0004252 ... P06869 28611361
    28 5wi6:A (2.72) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 29661938
    29 5wi6:B (2.72) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 29661938
    30 5wi6:C (2.72) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 29661938
    31 5wi6:D (2.72) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 29661938
    32 6vvu:A (3.0) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 33353951
    33 6vvu:B (3.0) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 33353951
    34 6vvu:C (3.0) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 33353951
    35 6vvu:D (3.0) BS01 0GJ 3.4.21.59 GO:0004252 ... Q15661 33353951
    36 7ahu:C (2.6) BS01 0GJ 3.4.21.6 GO:0004252 ... P00742 34077951
    37 7ahu:E (2.6) BS01 0GJ 3.4.21.6 GO:0004252 ... P00742 34077951
    38 7ahv:H (3.11) BS01 0GJ 3.4.21.22 GO:0004252 ... P00740 34077951
    39 8ol9:H (2.6) BS02 0GJ 3.4.21.22 GO:0004252 ... P00740 37421602
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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