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BioLiP
Download all results in tab-seperated text for 83 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a0h:B (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    2 1a0h:E (3.2) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 9438869
    3 1abj:H (2.4) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 1445905
    4 1aut:C (2.8) BS01 0G6 3.4.21.69 GO:0004252 ... P04070 9003757
    5 1dwe:H (3.0) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 1939071
    6 1fxy:A (2.15) BS01 0G6 3.4.21.4 GO:0004252 ... P07477 9707558
    7 1hai:H (2.4) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 7756983
    8 1hao:H (2.8) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 15299700
    9 1hap:H (2.8) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 15299700
    10 1hlt:H (3.0) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 7947765
    11 1hlt:K (3.0) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 7947765
    12 1nrr:H (2.4) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 8136362
    13 1orf:A (2.4) BS01 0G6 3.4.21.78 GO:0001772 ... P12544 12819769
    14 1pfx:C (3.0) BS01 0G6 3.4.21.22 GO:0004252 ... P16293 7568220
    15 1ppb:H (1.92) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 2583108
    16 1sfq:B (1.91) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 15152000
    17 1sfq:E (1.91) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 15152000
    18 1shh:B (1.55) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 15152000
    19 1shh:E (1.55) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 15152000
    20 1thp:B (2.1) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 10051558
    21 1tmu:H (2.5) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 8251938
    22 1tq7:B (2.4) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 15252033
    23 1xmn:B (1.85) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 15548541
    24 1xmn:D (1.85) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 15548541
    25 1xmn:F (1.85) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 15548541
    26 1xmn:H (1.85) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 15548541
    27 1z8i:B (2.0) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 15890651
    28 1z8j:B (2.0) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 15890651
    29 2a1d:B (3.5) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 16230338
    30 2a1d:F (3.5) BS01 0G6 3.4.21.5 GO:0004252 ... P00735 16230338
    31 2a45:B (3.65) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 16533041
    32 2a45:E (3.65) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 16533041
    33 2od3:B (1.75) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 17428793
    34 2pgq:B (1.8) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 17636263
    35 2thf:B (2.1) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 10051558
    36 3dd2:H (1.9) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 18971322
    37 3f6u:H (2.8) BS01 0G6 3.4.21.69 GO:0004252 ... P04070 12029084
    38 3p6z:B (1.7) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 21555742
    39 3p6z:H (1.7) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 21555742
    40 3qlp:H (2.14) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 21715374
    41 3sbk:A (2.55) BS01 0G6 3.4.21.95 GO:0004252 ... P18965 21871889
    42 4ch2:B (1.6) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    43 4ch2:D (1.6) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    44 4ch8:B (1.75) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    45 4ch8:D (1.75) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    46 4ch8:F (1.75) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    47 4ch8:H (1.75) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24316004
    48 4dih:H (1.8) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 22669903
    49 4dii:H (2.05) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 22669903
    50 4i7y:H (2.4) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24311581
    51 4lz1:H (1.65) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 24128303
    52 4lz4:B (2.56) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 24128303
    53 4lz4:D (2.56) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 24128303
    54 4nff:A (1.9) BS01 0G6 3.4.21.35 GO:0004252 ... P20151 25326387
    55 4rko:B (1.84) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 25664608
    56 5cmx:H (2.98) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 26673709
    57 5do4:H (1.859) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 27566147
    58 5e8e:H (1.9) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 26469093
    59 5ew1:H (2.95) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 27899589
    60 5ew2:H (3.59) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 27899589
    61 5jb9:S (1.3) BS01 0G6 3.4.21.22 GO:0004252 ... P00740 27208168
    62 5jba:S (1.4) BS02 0G6 3.4.21.22 GO:0004252 ... P00740 27208168
    63 5jbc:S (1.9) BS02 0G6 3.4.21.22 GO:0004252 ... P00740 27208168
    64 5to3:B (2.34) BS01 0G6 3.4.21.5 GO:0004252 ... P00734
    P07204    		 28294177
    65 6eo6:H (1.69) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 29684204
    66 6eo7:H (2.24) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 29684204
    67 6evv:H (2.5) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 30357392
    68 6gn7:H (2.8) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 30357392
    69 6px5:B (2.4) BS01 0G6 3.4.21.5 GO:0004252 ... P00734 31444378
    70 6qf7:B (4.0) BS01 0G6 3.4.21.38 GO:0004252 ... P00748 31205020
    71 6qf7:D (4.0) BS01 0G6 3.4.21.38 GO:0004252 ... P00748 31205020
    72 6v64:B (2.29) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 32358061
    73 6z8v:H (1.58) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 33614235
    74 6z8w:H (1.73) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 33614235
    75 6z8x:H (2.53) BS03 0G6 3.4.21.5 GO:0004252 ... P00734 33614235
    76 7ntu:B (3.1) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 33864869
    77 7ntu:D (3.1) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 33864869
    78 7zkl:H (3.18) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 36457701
    79 7zkm:H (2.0) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 36457701
    80 7zkn:B (3.03) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 36457701
    81 7zkn:D (3.03) BS05 0G6 3.4.21.5 GO:0004252 ... P00734 36457701
    82 7zko:H (2.5) BS04 0G6 3.4.21.5 GO:0004252 ... P00734 36457701
    83 8bw5:H (2.8) BS02 0G6 3.4.21.5 GO:0004252 ... P00734 37503836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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