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BioLiP
Download all results in tab-seperated text for 36 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4k4a:A (1.89) BS01 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    2 4k4a:A (1.89) BS02 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    3 4k4a:A (1.89) BS03 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    4 4k4a:B (1.89) BS01 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    5 4k4a:B (1.89) BS02 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    6 4k4a:B (1.89) BS03 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    7 4k4a:C (1.89) BS01 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    8 4k4a:C (1.89) BS02 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    9 4k4a:C (1.89) BS03 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    10 4k4a:D (1.89) BS01 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    11 4k4a:D (1.89) BS02 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    12 4k4a:D (1.89) BS03 0FQ 3.1.2.28 GO:0005829 ... P77781 25010423 MOAD: Ki=7.8uM
    13 4k4c:A (1.85) BS01 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    14 4k4c:A (1.85) BS02 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    15 4k4c:A (1.85) BS03 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    16 4k4c:B (1.85) BS01 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    17 4k4c:B (1.85) BS02 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    18 4k4c:B (1.85) BS03 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    19 4k4c:C (1.85) BS01 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    20 4k4c:C (1.85) BS02 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    21 4k4c:C (1.85) BS03 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    22 4k4c:D (1.85) BS01 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    23 4k4c:D (1.85) BS02 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    24 4k4c:D (1.85) BS03 0FQ 3.1.2.- GO:0005515 ... P0A8Y8 25010423 MOAD: Ki=65uM
    25 4qd8:C (1.616) BS01 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    26 4qd8:C (1.616) BS02 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    27 4qd8:C (1.616) BS03 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    28 4qd8:D (1.616) BS01 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    29 4qd8:D (1.616) BS02 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    30 4qd8:D (1.616) BS03 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    31 4qd8:E (1.616) BS01 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    32 4qd8:E (1.616) BS02 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    33 4qd8:E (1.616) BS03 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    34 4qd8:F (1.616) BS01 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    35 4qd8:F (1.616) BS02 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    36 4qd8:F (1.616) BS03 0FQ 3.1.2.- GO:0005829 ... Q9I3A4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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