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BioLiP
Download all results in tab-seperated text for 40 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3u8n:A (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    2 3u8n:A (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    3 3u8n:B (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    4 3u8n:B (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=10.17, Ki=0.067nM
    BindingDB: Ki=0.067nM
    5 3u8n:C (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    6 3u8n:C (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    7 3u8n:D (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    8 3u8n:D (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    9 3u8n:E (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    10 3u8n:E (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    11 3u8n:F (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    12 3u8n:F (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    13 3u8n:G (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    14 3u8n:G (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    15 3u8n:H (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    16 3u8n:H (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    17 3u8n:I (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    18 3u8n:I (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    19 3u8n:J (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    20 3u8n:J (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    21 3u8n:K (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    22 3u8n:K (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    23 3u8n:L (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    24 3u8n:L (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    25 3u8n:M (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    26 3u8n:M (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    27 3u8n:N (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    28 3u8n:N (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    29 3u8n:O (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    30 3u8n:O (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    31 3u8n:P (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    32 3u8n:P (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    33 3u8n:Q (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    34 3u8n:Q (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    35 3u8n:R (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    36 3u8n:R (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    37 3u8n:S (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    38 3u8n:S (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    39 3u8n:T (2.35) BS01 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    40 3u8n:T (2.35) BS02 09S ? GO:0004888 ... P58154 22170047 BindingDB: Ki=0.067nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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