Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 120 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3u8m:A (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    2 3u8m:A (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    3 3u8m:B (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    4 3u8m:B (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 PDBbind: -logKd/Ki=8.89, Ki=1.3nM
    BindingDB: Ki=1.3nM
    5 3u8m:C (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    6 3u8m:C (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    7 3u8m:D (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    8 3u8m:D (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    9 3u8m:E (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    10 3u8m:E (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    11 3u8m:F (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    12 3u8m:F (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    13 3u8m:G (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    14 3u8m:G (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    15 3u8m:H (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    16 3u8m:H (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    17 3u8m:I (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    18 3u8m:I (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    19 3u8m:J (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    20 3u8m:J (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    21 3u8m:K (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    22 3u8m:K (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    23 3u8m:L (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    24 3u8m:L (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    25 3u8m:M (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    26 3u8m:M (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    27 3u8m:N (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    28 3u8m:N (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    29 3u8m:O (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    30 3u8m:O (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    31 3u8m:P (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    32 3u8m:P (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    33 3u8m:Q (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    34 3u8m:Q (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    35 3u8m:R (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    36 3u8m:R (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    37 3u8m:S (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    38 3u8m:S (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    39 3u8m:T (2.7) BS01 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    40 3u8m:T (2.7) BS02 09R ? GO:0004888 ... P58154 22170047 BindingDB: Ki=1.3nM
    41 4um3:A (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    42 4um3:A (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    43 4um3:B (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    44 4um3:B (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    45 4um3:C (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    46 4um3:C (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    47 4um3:D (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    48 4um3:D (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    49 4um3:E (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    50 4um3:E (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    51 4um3:F (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    52 4um3:F (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    53 4um3:G (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    54 4um3:G (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    55 4um3:H (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    56 4um3:H (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    57 4um3:I (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    58 4um3:I (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    59 4um3:J (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    60 4um3:J (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    61 4um3:K (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    62 4um3:K (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    63 4um3:L (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    64 4um3:L (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    65 4um3:M (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    66 4um3:M (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    67 4um3:N (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    68 4um3:N (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    69 4um3:O (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    70 4um3:O (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    71 4um3:P (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=7.54, Ki=29nM
    BindingDB: Ki=1.3nM
    72 4um3:P (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=7.54, Ki=29nM
    BindingDB: Ki=1.3nM
    73 4um3:Q (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=7.54, Ki=29nM
    BindingDB: Ki=1.3nM
    74 4um3:Q (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 PDBbind: -logKd/Ki=7.54, Ki=29nM
    BindingDB: Ki=1.3nM
    75 4um3:R (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    76 4um3:R (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    77 4um3:S (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    78 4um3:S (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    79 4um3:T (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    80 4um3:T (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    81 4um3:U (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    82 4um3:U (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    83 4um3:V (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    84 4um3:V (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    85 4um3:W (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    86 4um3:W (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    87 4um3:X (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    88 4um3:X (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    89 4um3:Y (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    90 4um3:Y (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    91 4um3:Z (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    92 4um3:Z (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    93 4um3:a (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    94 4um3:a (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    95 4um3:b (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    96 4um3:b (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    97 4um3:c (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    98 4um3:c (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    99 4um3:d (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    100 4um3:d (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    101 4um3:e (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    102 4um3:e (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    103 4um3:f (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    104 4um3:f (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    105 4um3:g (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    106 4um3:g (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    107 4um3:h (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    108 4um3:h (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    109 4um3:i (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    110 4um3:i (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    111 4um3:j (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    112 4um3:j (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    113 4um3:k (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    114 4um3:k (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    115 4um3:l (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    116 4um3:l (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    117 4um3:m (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    118 4um3:m (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    119 4um3:n (2.703) BS01 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    120 4um3:n (2.703) BS02 09R ? GO:0004888 ... P58154 26180047 BindingDB: Ki=1.3nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218