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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 164 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3u5z:B (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    2 3u5z:C (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    3 3u5z:D (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    4 3u5z:L (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    5 3u5z:M (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    6 3u5z:N (3.5) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    7 3u60:B (3.34) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    8 3u60:C (3.34) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    9 3u60:D (3.34) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    10 3u61:C (3.2) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    11 3u61:D (3.2) BS02 08T 3.6.4.- GO:0003677 ... P04526 22194570
    12 4ly6:A (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    13 4ly6:B (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    14 4ly6:C (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    15 4ly6:C (3.6) BS02 08T ? GO:0005524 ... O67198 24240239
    16 4ly6:D (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    17 4ly6:E (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    18 4ly6:G (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    19 4ly6:H (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    20 4ly6:I (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    21 4ly6:J (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    22 4ly6:K (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    23 4ly6:M (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    24 4ly6:N (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    25 4ly6:O (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    26 4ly6:O (3.6) BS02 08T ? GO:0005524 ... O67198 24240239
    27 4ly6:P (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    28 4ly6:Q (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    29 4ly6:R (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    30 4ly6:S (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    31 4ly6:T (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    32 4ly6:U (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    33 4ly6:U (3.6) BS02 08T ? GO:0005524 ... O67198 24240239
    34 4ly6:V (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    35 4ly6:W (3.6) BS01 08T ? GO:0005524 ... O67198 24240239
    36 4lzz:A (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    37 4lzz:B (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    38 4lzz:C (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    39 4lzz:D (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    40 4lzz:E (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    41 4lzz:E (3.21) BS02 08T ? GO:0005524 ... O67198 24240239
    42 4lzz:G (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    43 4lzz:H (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    44 4lzz:I (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    45 4lzz:J (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    46 4lzz:J (3.21) BS02 08T ? GO:0005524 ... O67198 24240239
    47 4lzz:K (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    48 4lzz:L (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    49 4lzz:M (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    50 4lzz:N (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    51 4lzz:O (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    52 4lzz:O (3.21) BS02 08T ? GO:0005524 ... O67198 24240239
    53 4lzz:P (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    54 4lzz:Q (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    55 4lzz:Q (3.21) BS02 08T ? GO:0005524 ... O67198 24240239
    56 4lzz:R (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    57 4lzz:R (3.21) BS02 08T ? GO:0005524 ... O67198 24240239
    58 4lzz:S (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    59 4lzz:T (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    60 4lzz:U (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    61 4lzz:V (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    62 4lzz:W (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    63 4lzz:X (3.21) BS01 08T ? GO:0005524 ... O67198 24240239
    64 6mii:A (3.15) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    65 6mii:B (3.15) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    66 6mii:B (3.15) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    67 6mii:C (3.15) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    68 6mii:C (3.15) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    69 6mii:D (3.15) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 31308367
    70 6qel:H (3.9) BS01 08T ? GO:0003677 ... P0AEF0 30797687
    71 6qel:I (3.9) BS01 08T ? GO:0003677 ... P0AEF0 30797687
    72 6qel:J (3.9) BS01 08T ? GO:0003677 ... P0AEF0 30797687
    73 6qel:K (3.9) BS01 08T ? GO:0003677 ... P0AEF0 30797687
    74 6qel:L (3.9) BS01 08T ? GO:0003677 ... P0AEF0 30797687
    75 6qem:A (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    76 6qem:A (3.4) BS04 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    77 6qem:B (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    78 6qem:B (3.4) BS04 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    79 6qem:C (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    80 6qem:C (3.4) BS04 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    81 6qem:D (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    82 6qem:D (3.4) BS04 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    83 6qem:E (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    84 6qem:F (3.4) BS02 08T 3.6.4.12 GO:0003677 ... P0ACB0 30797687
    85 7liu:A (3.001) BS02 08T 3.6.4.13 GO:0003676 ... O00571 N/A
    86 7liu:B (3.001) BS02 08T 3.6.4.13 GO:0003676 ... O00571 N/A
    87 8eaf:A (2.62) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    88 8eaf:B (2.62) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    89 8eaf:B (2.62) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    90 8eaf:C (2.62) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    91 8eaf:C (2.62) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    92 8eaf:D (2.62) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    93 8eaf:D (2.62) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    94 8eaf:E (2.62) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    95 8eaf:E (2.62) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    96 8eaf:F (2.62) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    97 8eag:B (3.01) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    98 8eag:C (3.01) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    99 8eag:C (3.01) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    100 8eag:D (3.01) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    101 8eag:D (3.01) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    102 8eag:E (3.01) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    103 8eag:E (3.01) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    104 8eag:F (3.01) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    105 8eah:A (2.48) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    106 8eah:B (2.48) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    107 8eah:B (2.48) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    108 8eah:C (2.48) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    109 8eah:C (2.48) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    110 8eah:D (2.48) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    111 8eah:D (2.48) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    112 8eah:E (2.48) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    113 8eah:E (2.48) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    114 8eah:F (2.48) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    115 8eai:B (2.76) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    116 8eai:C (2.76) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    117 8eai:C (2.76) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    118 8eai:D (2.76) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    119 8eai:D (2.76) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    120 8eai:E (2.76) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    121 8eai:E (2.76) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    122 8eai:F (2.76) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    123 8eaj:A (2.45) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    124 8eaj:B (2.45) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    125 8eaj:B (2.45) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    126 8eaj:C (2.45) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    127 8eaj:C (2.45) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    128 8eaj:D (2.45) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    129 8eaj:D (2.45) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    130 8eaj:E (2.45) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    131 8eaj:E (2.45) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    132 8eaj:F (2.45) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    133 8eak:B (2.67) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    134 8eak:C (2.67) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    135 8eak:C (2.67) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    136 8eak:D (2.67) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    137 8eak:D (2.67) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    138 8eak:E (2.67) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    139 8eak:E (2.67) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    140 8eak:F (2.67) BS01 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    141 8eal:A (2.34) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    142 8eal:B (2.34) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    143 8eal:B (2.34) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    144 8eal:C (2.34) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    145 8eal:C (2.34) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    146 8eal:D (2.34) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    147 8eal:D (2.34) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    148 8eal:E (2.34) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    149 8eal:E (2.34) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    150 8eal:F (2.34) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    151 8eam:B (2.59) BS03 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    152 8eam:C (2.59) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    153 8eam:C (2.59) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    154 8eam:D (2.59) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    155 8eam:D (2.59) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    156 8eam:E (2.59) BS02 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    157 8eam:E (2.59) BS04 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    158 8eam:F (2.59) BS01 08T 3.6.4.12 GO:0003677 ... Q9UXG1 36499022
    159 8uh7:B (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    160 8uh7:C (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    161 8uh7:D (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    162 8unf:B (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    163 8unf:C (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    164 8unf:D (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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