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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 146 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3un4:H (3.4) BS01 04C 3.4.25.1 GO:0004298 ... P25043 22341445
    2 3un4:I (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P25451 22341445
    3 3un4:K (3.4) BS01 04C 3.4.25.1 GO:0004298 ... P30656 22341445
    4 3un4:L (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P23724 22341445
    5 3un4:N (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P38624 22341445
    6 3un4:V (3.4) BS01 04C 3.4.25.1 GO:0004298 ... P25043 22341445
    7 3un4:W (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P25451 22341445
    8 3un4:Y (3.4) BS01 04C 3.4.25.1 GO:0004298 ... P30656 22341445
    9 3un4:Z (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P23724 22341445
    10 3un4:b (3.4) BS01 04C 3.4.25.1 GO:0000502 ... P38624 22341445
    11 3unb:1 (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O55234 22341445
    12 3unb:4 (2.9) BS01 04C 3.4.25.1 GO:0004298 ... Q60692 22341445
    13 3unb:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P70195 22341445
    14 3unb:I (2.9) BS01 04C 3.4.25.1 GO:0000502 ... Q9R1P1 22341445
    15 3unb:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O55234 22341445
    16 3unb:N (2.9) BS01 04C 3.4.25.1 GO:0004298 ... Q60692 22341445
    17 3unb:V (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P70195 22341445
    18 3unb:Y (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O55234 22341445
    19 3unb:b (2.9) BS01 04C 3.4.25.1 GO:0004298 ... Q60692 22341445
    20 3unb:j (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P70195 22341445
    21 3unb:k (2.9) BS01 04C 3.4.25.1 GO:0000502 ... Q9R1P1 22341445
    22 3unb:m (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O55234 22341445
    23 3unb:p (2.9) BS01 04C 3.4.25.1 GO:0004298 ... Q60692 22341445
    24 3unb:x (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P70195 22341445
    25 3unb:y (2.9) BS01 04C 3.4.25.1 GO:0000502 ... Q9R1P1 22341445
    26 3unf:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O35955 22341445
    27 3unf:I (2.9) BS01 04C ? GO:0000502 ... Q9R1P1 22341445
    28 3unf:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P28063 22341445
    29 3unf:N (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P28076 22341445
    30 3unf:V (2.9) BS01 04C 3.4.25.1 GO:0004298 ... O35955 22341445
    31 3unf:W (2.9) BS01 04C ? GO:0000502 ... Q9R1P1 22341445
    32 3unf:Y (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P28063 22341445
    33 3unf:b (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P28076 22341445
    34 4qwx:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.27, IC50=0.540uM
    35 4qwx:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    36 4qwx:N (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    37 4qwx:V (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    38 4qwx:Y (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    39 4qwx:b (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    40 4qxj:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.90, IC50=1.265uM
    41 4qxj:K (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    42 4qxj:N (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    43 4qxj:V (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    44 4qxj:Y (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    45 4qxj:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    46 4qz0:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.46, IC50=3.502uM
    47 4qz0:K (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    48 4qz0:N (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    49 4qz0:V (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    50 4qz0:Y (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    51 4qz0:b (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    52 4qz1:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.44, IC50=3.658uM
    53 4qz1:K (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    54 4qz1:N (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    55 4qz1:V (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    56 4qz1:Y (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    57 4qz1:b (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    58 4qz2:H (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.21, IC50=6.167uM
    59 4qz2:K (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    60 4qz2:N (2.7) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    61 4qz2:V (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    62 4qz2:Y (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    63 4qz2:b (2.7) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    64 4qz3:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.51, IC50=3.085uM
    65 4qz3:K (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    66 4qz3:N (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    67 4qz3:V (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    68 4qz3:Y (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    69 4qz3:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    70 4qz4:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.01, IC50=9.830uM
    71 4qz4:K (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    72 4qz4:N (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    73 4qz4:V (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    74 4qz4:Y (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    75 4qz4:b (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    76 4qz5:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.26, IC50=5.452uM
    77 4qz5:K (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    78 4qz5:N (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    79 4qz5:V (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    80 4qz5:W (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P25451 25599643
    81 4qz5:Y (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    82 4qz5:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    83 4qz6:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.53, IC50=2.979uM
    84 4qz6:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    85 4qz6:N (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    86 4qz6:V (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    87 4qz6:Y (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    88 4qz6:b (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    89 4qz7:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.65, IC50=2.262uM
    90 4qz7:K (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    91 4qz7:N (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    92 4qz7:V (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    93 4qz7:Y (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    94 4qz7:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    95 4qzw:H (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=5.15, IC50=7.155uM
    96 4qzw:N (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    97 4qzw:V (3.0) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    98 4qzw:b (3.0) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    99 4qzx:H (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643 PDBbind: -logKd/Ki=6.26, IC50=0.553uM
    100 4qzx:K (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    101 4qzx:N (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    102 4qzx:V (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P25043 25599643
    103 4qzx:Y (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P30656 25599643
    104 4qzx:b (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P38624 25599643
    105 5cgi:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 26563572
    106 5cgi:K (2.8) BS02 04C 3.4.25.1 GO:0004298 ... P30656 26563572
    107 5cgi:N (2.8) BS02 04C 3.4.25.1 GO:0000502 ... P38624 26563572
    108 5cgi:V (2.8) BS02 04C 3.4.25.1 GO:0004298 ... P25043 26563572
    109 5cgi:W (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P25451 26563572
    110 5cgi:Y (2.8) BS02 04C 3.4.25.1 GO:0004298 ... P30656 26563572
    111 5cgi:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 26563572
    112 5l5d:H (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    113 5l5d:I (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P25451 27789522
    114 5l5d:K (2.8) BS01 04C 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    115 5l5d:N (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    116 5l5d:V (2.8) BS02 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    117 5l5d:Y (2.8) BS02 04C 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    118 5l5d:b (2.8) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    119 5l5u:H (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    120 5l5u:K (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    121 5l5u:L (2.6) BS01 04C 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    122 5l5u:V (2.6) BS02 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    123 5l5u:Y (2.6) BS03 04C 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    124 5l5u:Z (2.6) BS01 04C 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    125 5l5x:H (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    126 5l5x:K (2.9) BS01 04C 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    127 5l5x:N (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    128 5l5x:V (2.9) BS02 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    129 5l5x:Y (2.9) BS02 04C 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    130 5l5x:b (2.9) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    131 5l63:H (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    132 5l63:I (2.7) BS01 04C 3.4.25.1 GO:0000502 ... P25451 27789522
    133 5l63:K (2.7) BS01 04C 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    134 5l63:L (2.7) BS01 04C 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    135 5l63:V (2.7) BS02 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    136 5l63:W (2.7) BS01 04C 3.4.25.1 GO:0000502 ... P25451 27789522
    137 5l63:Y (2.7) BS02 04C 3.4.25.1 GO:0004298 ... P28074
    P30656    		 27789522
    138 5l63:Z (2.7) BS01 04C 3.4.25.1 GO:0005839 ... P20618
    P23724    		 27789522
    139 5l6b:H (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    140 5l6b:I (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P25451 27789522
    141 5l6b:K (2.6) BS01 04C 3.4.25.1 GO:0004298 ... P28063
    P30656    		 27789522
    142 5l6b:N (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    143 5l6b:V (2.6) BS02 04C 3.4.25.1 GO:0004298 ... P25043 27789522
    144 5l6b:W (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P25451 27789522
    145 5l6b:Y (2.6) BS02 04C 3.4.25.1 GO:0004298 ... P28063
    P30656    		 27789522
    146 5l6b:b (2.6) BS01 04C 3.4.25.1 GO:0000502 ... P38624 27789522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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