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BioLiP
Download all results in tab-seperated text for 13 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 4ii8:A (1.88) BS01 010 3.2.1.17 GO:0003796 ... P00698 26926993
    2 5eb5:A (2.8) BS02 010 4.1.2.10 GO:0016491 ... O24243 27067080
    3 5eb5:B (2.8) BS02 010 4.1.2.10 GO:0016491 ... O24243 27067080
    4 5onl:A (1.7) BS01 010 ? N/A O31815 30387270
    5 6hrj:A (1.7) BS01 010 ? N/A O31815 30387270
    6 7bi5:A (1.74) BS02 010 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 33647799
    7 7v42:A (1.69) BS02 010 ? GO:0004497 ... A0A088FL33 N/A
    8 8cxd:A (1.8) BS01 010 ? GO:0003756 ... P0AEG4 36760747
    9 8cxd:A (1.8) BS02 010 ? GO:0003756 ... P0AEG4 36760747
    10 8cxd:A (1.8) BS03 010 ? GO:0003756 ... P0AEG4 36760747
    11 8cxd:B (1.8) BS01 010 ? GO:0003756 ... P0AEG4 36760747
    12 8cxd:B (1.8) BS03 010 ? GO:0003756 ... P0AEG4 36760747
    13 8cxd:B (1.8) BS04 010 ? GO:0003756 ... P0AEG4 36760747
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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