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BioLiP
Download all results in tab-seperated text for 10 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fnu:A (3.0) BS01 006 3.4.23.39 GO:0004190 ... Q8IM15 19285084 PDBbind: -logKd/Ki=6.16, IC50=0.69uM
    2 3fnu:B (3.0) BS01 006 3.4.23.39 GO:0004190 ... Q8IM15 19285084 PDBbind: -logKd/Ki=6.16, IC50=0.69uM
    3 3fnu:C (3.0) BS01 006 3.4.23.39 GO:0004190 ... Q8IM15 19285084
    4 3fnu:D (3.0) BS01 006 3.4.23.39 GO:0004190 ... Q8IM15 19285084
    5 3kdb:A (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    6 3kdb:B (1.66) BS01 006 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03367 20028396 MOAD: Kd=0.14nM
    PDBbind: -logKd/Ki=9.85, Kd=0.14nM
    7 3qs1:A (3.1) BS01 006 3.4.23.38 GO:0004190 ... P39898 21521654 PDBbind: -logKd/Ki=7.96, Ki=11.0nM
    BindingDB: IC50=280nM
    8 3qs1:B (3.1) BS01 006 3.4.23.38 GO:0004190 ... P39898 21521654 PDBbind: -logKd/Ki=7.96, Ki=11.0nM
    BindingDB: IC50=280nM
    9 3qs1:C (3.1) BS01 006 3.4.23.38 GO:0004190 ... P39898 21521654 BindingDB: IC50=280nM
    10 3qs1:D (3.1) BS01 006 3.4.23.38 GO:0004190 ... P39898 21521654 BindingDB: IC50=280nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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