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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    713801 9ica:A (3.0) BS04 STP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713802 9icb:A (3.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713803 9icb:A (3.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713804 9icb:A (3.2) BS03 CO 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713805 9icb:A (3.2) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713806 9icc:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713807 9icc:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713808 9icc:A (3.1) BS03 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713809 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    PDBbind: -logKd/Ki=3.90, Kd=125uM
    713810 9ice:A (3.3) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713811 9ice:A (3.3) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713812 9icf:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713813 9icf:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713814 9icf:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713815 9icf:A (3.0) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713816 9icg:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713817 9icg:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713818 9icg:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713819 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713820 9ich:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713821 9ich:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713822 9ich:A (2.9) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713823 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713824 9ici:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713825 9ici:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713826 9ici:A (3.1) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713827 9icj:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713828 9icj:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713829 9ick:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713830 9ick:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713831 9icl:A (2.8) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713832 9icl:A (2.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713833 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713834 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    713835 9icm:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713836 9icm:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713837 9icn:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713838 9icn:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713839 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713840 9ico:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713841 9ico:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713842 9icp:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713843 9icp:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713844 9icq:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713845 9icq:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713846 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713847 9icq:A (2.9) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713848 9icr:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713849 9icr:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713850 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713851 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713852 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713853 9ics:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713854 9ics:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713855 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713856 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713857 9ict:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713858 9ict:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713859 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713860 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713861 9icu:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713862 9icu:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713863 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    713864 9icv:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713865 9icv:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713866 9icv:A (2.7) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713867 9icv:A (2.7) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    713868 9icw:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713869 9icw:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713870 9icx:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713871 9icx:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713872 9icy:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713873 9icy:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    713874 9iil:A (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713875 9iil:B (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713876 9iil:C (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713877 9iil:D (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713878 9iim:A (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713879 9iim:B (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713880 9iim:C (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713881 9iim:D (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    713882 9iiw:R (3.15) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713883 9iiw:R (3.15) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713884 9iix:R (2.89) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713885 9iix:R (2.89) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713886 9ij6:A (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    713887 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    713888 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    713889 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    713890 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    713891 9ij9:R (2.7) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713892 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    713893 9ija:R (3.05) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    713894 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    713895 9ijp:C (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    713896 9ijp:L (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    713897 9ild:A (2.179) BS01 peptide N/A GO:0006508 ... A0A3J1GR98 N/A
    713898 9ild:A (2.179) BS02 ZN N/A GO:0006508 ... A0A3J1GR98 N/A
    713899 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    713900 9int:A (1.56) BS02 9RN N/A GO:0004553 ... A0A1B1Y771 39214858
    713901 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    713902 9iq9:A (1.58) BS01 MN N/A GO:0004053 ... D2Z025 N/A
    713903 9iq9:A (1.58) BS02 MN N/A GO:0004053 ... D2Z025 N/A
    713904 9iq9:B (1.58) BS01 CU1 N/A GO:0004053 ... D2Z025 N/A
    713905 9iq9:B (1.58) BS02 CU1 N/A GO:0004053 ... D2Z025 N/A
    713906 9iq9:B (1.58) BS03 CU1 N/A GO:0004053 ... D2Z025 N/A
    713907 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    713908 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    713909 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    713910 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    713911 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    713912 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    713913 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    713914 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    713915 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    713916 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    713917 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    713918 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    713919 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    713920 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    713921 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    713922 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    713923 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    713924 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    713925 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    713926 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    713927 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    713928 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    713929 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    713930 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    713931 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    713932 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    713933 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    713934 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    713935 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    713936 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713937 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713938 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    713939 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713940 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713941 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    713942 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713943 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713944 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    713945 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    713946 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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