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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19601 1jfh:A (2.03) BS05 GLC 3.2.1.1 GO:0003824 ... P00690 9385631
    19602 1jfh:A (2.03) BS06 CA 3.2.1.1 GO:0003824 ... P00690 9385631
    19603 1jfi:B (2.62) BS01 dna ? GO:0000122 ... Q01658 11461703
    19604 1jfi:B (2.62) BS02 dna ? GO:0000122 ... Q01658 11461703
    19605 1jfi:C (2.62) BS01 dna ? GO:0003677 ... P20226 11461703
    19606 1jfi:C (2.62) BS02 dna ? GO:0003677 ... P20226 11461703
    19607 1jfk:A (-1.00) BS01 CA ? GO:0001891 ... P38505 11724551
    19608 1jfk:A (-1.00) BS02 CA ? GO:0001891 ... P38505 11724551
    19609 1jfk:A (-1.00) BS03 CA ? GO:0001891 ... P38505 11724551
    19610 1jfk:A (-1.00) BS04 CA ? GO:0001891 ... P38505 11724551
    19611 1jfp:A (-1.00) BS01 RET ? GO:0000139 ... P02699 11570894
    19612 1jfs:A (2.9) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2.2nM
    19613 1jfs:A (2.9) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    19614 1jft:A (2.5) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=0.7nM
    19615 1jft:A (2.5) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    19616 1jfz:A (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    19617 1jfz:B (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    19618 1jfz:C (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    19619 1jfz:D (2.1) BS01 MN 3.1.26.3 GO:0004525 ... O67082 11738048
    19620 1jg0:A (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    19621 1jg0:A (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    19622 1jg0:B (2.0) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 11590022
    19623 1jg0:B (2.0) BS02 DDT 2.1.1.45 GO:0000287 ... P0A884 11590022 MOAD: ic50=5uM
    PDBbind: -logKd/Ki=5.30, IC50=5.0uM
    BindingDB: IC50=5.0e+3nM, Ki=1.8e+3nM
    19624 1jg1:A (1.2) BS01 SAH 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19625 1jg2:A (1.5) BS01 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19626 1jg3:A (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19627 1jg3:A (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19628 1jg3:B (2.1) BS01 peptide 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19629 1jg3:B (2.1) BS02 ADN 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19630 1jg4:A (1.5) BS01 SAM 2.1.1.77 GO:0004719 ... Q8TZR3 11700066
    19631 1jg6:A (1.9) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    19632 1jg7:A (1.65) BS01 UDP 2.4.1.27 GO:0006304 ... P04547 11493010
    19633 1jg8:A (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19634 1jg8:B (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19635 1jg8:B (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19636 1jg8:C (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19637 1jg8:D (1.8) BS01 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19638 1jg8:D (1.8) BS02 CA 4.1.2.5 GO:0005829 ... Q9X266 N/A
    19639 1jg9:A (1.66) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    19640 1jg9:A (1.66) BS02 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    19641 1jgc:A (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    19642 1jgc:B (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    19643 1jgc:C (2.6) BS01 HEM 1.16.3.1 GO:0004322 ... Q59738 11752777
    19644 1jgg:A (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    19645 1jgg:A (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    19646 1jgg:B (2.0) BS01 dna ? GO:0000981 ... P06602 8557047
    19647 1jgg:B (2.0) BS02 dna ? GO:0000981 ... P06602 8557047
    19648 1jgi:A (2.0) BS01 GLC 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    19649 1jgi:A (2.0) BS02 FRU 2.4.1.4 GO:0005576 ... Q9ZEU2 11467966
    19650 1jgj:A (2.4) BS01 RET ? GO:0005216 ... P42196 11452084
    19651 1jgm:A (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    19652 1jgm:A (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    19653 1jgm:A (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    19654 1jgm:B (1.3) BS01 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    19655 1jgm:B (1.3) BS02 CD 3.1.8.1 GO:0004063 ... P0A434 11258882
    19656 1jgm:B (1.3) BS03 PEL 3.1.8.1 GO:0004063 ... P0A434 11258882
    19657 1jgo:J (5.6) BS01 rna ? GO:0000028 ... P17291 11511350
    19658 1jgp:J (7.0) BS01 rna ? GO:0000028 ... P17291 11511350
    19659 1jgq:J (5.0) BS01 rna ? GO:0000028 ... P17291 11511350
    19660 1jgt:A (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19661 1jgt:A (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19662 1jgt:A (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19663 1jgt:B (1.95) BS01 MG 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19664 1jgt:B (1.95) BS02 APC 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19665 1jgt:B (1.95) BS03 CMA 6.3.3.4 GO:0004066 ... P0DJQ7 11473258
    19666 1jgw:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    19667 1jgw:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    19668 1jgw:L (2.8) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    19669 1jgw:L (2.8) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    19670 1jgw:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    19671 1jgw:L (2.8) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    19672 1jgw:L (2.8) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    19673 1jgw:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    19674 1jgw:M (2.8) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    19675 1jgw:M (2.8) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    19676 1jgw:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    19677 1jgw:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    19678 1jgw:M (2.8) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    19679 1jgw:M (2.8) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    19680 1jgw:M (2.8) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    19681 1jgx:L (3.01) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    19682 1jgx:L (3.01) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    19683 1jgx:L (3.01) BS03 BCL ? GO:0009772 ... P0C0Y8 11526320
    19684 1jgx:L (3.01) BS04 BPH ? GO:0009772 ... P0C0Y8 11526320
    19685 1jgx:L (3.01) BS05 FE ? GO:0009772 ... P0C0Y8 11526320
    19686 1jgx:L (3.01) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    19687 1jgx:M (3.01) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    19688 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    19689 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    19690 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    19691 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    19692 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    19693 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    19694 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    19695 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    19696 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    19697 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    19698 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    19699 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    19700 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    19701 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    19702 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    19703 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    19704 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    19705 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    19706 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    19707 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    19708 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    19709 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    19710 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    19711 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    19712 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    19713 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    19714 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    19715 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    19716 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    19717 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    19718 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    19719 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    19720 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    19721 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    19722 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    19723 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    19724 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    19725 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    19726 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    19727 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    19728 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    19729 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    19730 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    19731 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    19732 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    19733 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    19734 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    19735 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    19736 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    19737 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    19738 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    19739 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    19740 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    19741 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    19742 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    19743 1jh1:A (2.7) BS05 JST 3.4.24.34 GO:0004222 ... P22894 11563922 PDBbind: -logKd/Ki=4.39, Ki=41uM
    19744 1jh7:A (2.4) BS01 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    19745 1jh7:A (2.4) BS02 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    19746 1jh8:A (1.8) BS01 ADE 2.4.2.21 GO:0000166 ... Q05603 11441022
    19747 1jh9:A (2.55) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2nM
    19748 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    19749 1jha:A (2.0) BS01 AAM 2.4.2.21 GO:0000166 ... Q05603 11441022
    19750 1jha:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19751 1jhd:A (1.7) BS01 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    19752 1jhd:A (1.7) BS02 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    19753 1jhd:A (1.7) BS03 SO4 2.7.7.4 GO:0000103 ... Q54506 11724564
    19754 1jhg:A (1.3) BS01 TRP ? GO:0003677 ... P0A881 8946848
    19755 1jhm:A (2.2) BS01 5MB 2.4.2.21 GO:0000166 ... Q05603 11441022
    19756 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    19757 1jho:A (2.0) BS01 RMB 2.4.2.21 GO:0000166 ... Q05603 11441022
    19758 1jho:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19759 1jhp:A (2.2) BS01 5OB 2.4.2.21 GO:0000166 ... Q05603 11441022
    19760 1jhq:A (2.0) BS01 PMO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19761 1jhq:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19762 1jhr:A (2.0) BS01 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19763 1jhr:A (2.0) BS02 P2P 2.4.2.21 GO:0000166 ... Q05603 11441022
    19764 1jhu:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    19765 1jhv:A (2.0) BS01 PCR 2.4.2.21 GO:0000166 ... Q05603 11441022
    19766 1jhv:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19767 1jhx:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    19768 1jhy:A (2.0) BS01 IPH 2.4.2.21 GO:0000166 ... Q05603 11441022
    19769 1jhy:A (2.0) BS02 NIO 2.4.2.21 GO:0000166 ... Q05603 11441022
    19770 1ji0:A (2.0) BS01 ATP ? GO:0005524 ... Q9X0M3 N/A
    19771 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19772 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19773 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19774 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19775 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19776 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    19777 1ji2:A (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    19778 1ji2:B (2.3) BS01 CA 3.2.1.135 GO:0004553 ... Q08751 12051850
    19779 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    19780 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    19781 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    19782 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    19783 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19784 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19785 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19786 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19787 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19788 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19789 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19790 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19791 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19792 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19793 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19794 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19795 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19796 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19797 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19798 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19799 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    19800 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218