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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19201 1jb0:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19202 1jb0:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19203 1jb0:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19204 1jb0:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19205 1jb0:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19206 1jb0:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19207 1jb0:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19208 1jb0:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19209 1jb0:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19210 1jb0:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19211 1jb0:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19212 1jb0:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19213 1jb0:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19214 1jb0:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19215 1jb0:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19216 1jb0:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19217 1jb0:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19218 1jb0:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19219 1jb0:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19220 1jb0:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19221 1jb0:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19222 1jb0:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19223 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19224 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19225 1jb0:A (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19226 1jb0:A (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19227 1jb0:A (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19228 1jb0:A (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19229 1jb0:A (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19230 1jb0:A (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19231 1jb0:A (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19232 1jb0:A (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19233 1jb0:A (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19234 1jb0:A (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19235 1jb0:A (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19236 1jb0:A (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19237 1jb0:A (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19238 1jb0:A (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19239 1jb0:A (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19240 1jb0:A (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19241 1jb0:A (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19242 1jb0:A (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19243 1jb0:A (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19244 1jb0:A (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19245 1jb0:A (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19246 1jb0:A (2.5) BS47 PQN 1.97.1.12 GO:0000287 ... P0A405 11418848
    19247 1jb0:A (2.5) BS48 SF4 1.97.1.12 GO:0000287 ... P0A405 11418848
    19248 1jb0:A (2.5) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19249 1jb0:A (2.5) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19250 1jb0:A (2.5) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19251 1jb0:A (2.5) BS52 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    19252 1jb0:B (2.5) BS01 peptide 1.97.1.12 GO:0000287 ... P0A407 11418848
    19253 1jb0:B (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19254 1jb0:B (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19255 1jb0:B (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19256 1jb0:B (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19257 1jb0:B (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19258 1jb0:B (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19259 1jb0:B (2.5) BS08 SF4 1.97.1.12 GO:0000287 ... P0A407 11418848
    19260 1jb0:B (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19261 1jb0:B (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19262 1jb0:B (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19263 1jb0:B (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19264 1jb0:B (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19265 1jb0:B (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19266 1jb0:B (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19267 1jb0:B (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19268 1jb0:B (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19269 1jb0:B (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19270 1jb0:B (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19271 1jb0:B (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19272 1jb0:B (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19273 1jb0:B (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19274 1jb0:B (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19275 1jb0:B (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19276 1jb0:B (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19277 1jb0:B (2.5) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19278 1jb0:B (2.5) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19279 1jb0:B (2.5) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19280 1jb0:B (2.5) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19281 1jb0:B (2.5) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19282 1jb0:B (2.5) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19283 1jb0:B (2.5) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19284 1jb0:B (2.5) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19285 1jb0:B (2.5) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19286 1jb0:B (2.5) BS35 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19287 1jb0:B (2.5) BS36 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19288 1jb0:B (2.5) BS37 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19289 1jb0:B (2.5) BS38 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19290 1jb0:B (2.5) BS39 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19291 1jb0:B (2.5) BS40 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19292 1jb0:B (2.5) BS41 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19293 1jb0:B (2.5) BS42 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19294 1jb0:B (2.5) BS43 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19295 1jb0:B (2.5) BS44 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19296 1jb0:B (2.5) BS45 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19297 1jb0:B (2.5) BS46 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19298 1jb0:B (2.5) BS47 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19299 1jb0:B (2.5) BS48 CLA 1.97.1.12 GO:0000287 ... P0A407 11418848
    19300 1jb0:B (2.5) BS49 PQN 1.97.1.12 GO:0000287 ... P0A407 11418848
    19301 1jb0:C (2.5) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    19302 1jb0:C (2.5) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 11418848
    19303 1jb0:F (2.5) BS01 CLA ? GO:0009522 ... P0A401 11418848
    19304 1jb0:F (2.5) BS02 CLA ? GO:0009522 ... P0A401 11418848
    19305 1jb0:F (2.5) BS03 CLA ? GO:0009522 ... P0A401 11418848
    19306 1jb0:F (2.5) BS04 CLA ? GO:0009522 ... P0A401 11418848
    19307 1jb0:I (2.5) BS01 CLA ? GO:0009522 ... P0A427 11418848
    19308 1jb0:I (2.5) BS02 CLA ? GO:0009522 ... P0A427 11418848
    19309 1jb0:I (2.5) BS03 CLA ? GO:0009522 ... P0A427 11418848
    19310 1jb0:I (2.5) BS04 CLA ? GO:0009522 ... P0A427 11418848
    19311 1jb0:J (2.5) BS01 CLA ? GO:0009522 ... P0A429 11418848
    19312 1jb0:J (2.5) BS02 CLA ? GO:0009522 ... P0A429 11418848
    19313 1jb0:J (2.5) BS03 CLA ? GO:0009522 ... P0A429 11418848
    19314 1jb0:J (2.5) BS04 CLA ? GO:0009522 ... P0A429 11418848
    19315 1jb0:J (2.5) BS05 CLA ? GO:0009522 ... P0A429 11418848
    19316 1jb0:J (2.5) BS06 CLA ? GO:0009522 ... P0A429 11418848
    19317 1jb0:K (2.5) BS01 CLA ? GO:0009522 ... P0A425 11418848
    19318 1jb0:L (2.5) BS01 CLA ? GO:0009522 ... Q8DGB4 11418848
    19319 1jb0:L (2.5) BS02 CLA ? GO:0009522 ... Q8DGB4 11418848
    19320 1jb0:L (2.5) BS03 CLA ? GO:0009522 ... Q8DGB4 11418848
    19321 1jb0:L (2.5) BS04 CA ? GO:0009522 ... Q8DGB4 11418848
    19322 1jb0:L (2.5) BS05 CLA ? GO:0009522 ... Q8DGB4 11418848
    19323 1jb0:L (2.5) BS06 CLA ? GO:0009522 ... Q8DGB4 11418848
    19324 1jb0:L (2.5) BS07 CLA ? GO:0009522 ... Q8DGB4 11418848
    19325 1jb0:M (2.5) BS01 CLA ? GO:0009522 ... P0A403 11418848
    19326 1jb0:M (2.5) BS02 CLA ? GO:0009522 ... P0A403 11418848
    19327 1jb7:A (1.86) BS01 dna ? GO:0000723 ... P29549 11428895
    19328 1jb7:A (1.86) BS02 dna ? GO:0000723 ... P29549 11428895
    19329 1jb9:A (1.7) BS01 FAD 1.18.1.2 GO:0000166 ... Q41736 11724563
    19330 1jba:A (-1.00) BS01 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    19331 1jba:A (-1.00) BS02 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    19332 1jba:A (-1.00) BS03 CA 4.6.1.2 GO:0001750 ... P51177 10383444
    19333 1jbd:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11814338
    19334 1jbp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 8003955
    19335 1jbp:E (2.2) BS02 ADP 2.7.11.11 GO:0000122 ... P05132 8003955
    19336 1jbq:A (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19337 1jbq:A (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19338 1jbq:B (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19339 1jbq:B (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19340 1jbq:C (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19341 1jbq:C (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19342 1jbq:D (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19343 1jbq:D (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19344 1jbq:E (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19345 1jbq:E (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19346 1jbq:F (2.6) BS01 HEM 4.2.1.22 GO:0004122 ... P35520 11483494
    19347 1jbq:F (2.6) BS02 PLP 4.2.1.22 GO:0004122 ... P35520 11483494
    19348 1jbr:A (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    19349 1jbr:B (2.15) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244 PDBbind: Kd=1uM
    19350 1jbs:A (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    19351 1jbs:B (1.97) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    19352 1jbt:A (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    19353 1jbt:B (2.7) BS01 rna 3.1.27.- GO:0003723 ... P67876 11685244
    19354 1jbu:H (2.0) BS01 peptide 3.4.21.21 GO:0004252 ... P08709 11470437
    19355 1jbv:A (1.95) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    19356 1jbv:A (1.95) BS02 ACP 6.3.2.17 GO:0004326 ... P15925 11501996
    19357 1jbw:A (1.85) BS01 MG 6.3.2.17 GO:0004326 ... P15925 11501996
    19358 1jbw:A (1.85) BS02 ACQ 6.3.2.17 GO:0004326 ... P15925 11501996
    19359 1jbw:A (1.85) BS03 TMF 6.3.2.17 GO:0004326 ... P15925 11501996
    19360 1jbz:A (1.5) BS01 MG ? GO:0003674 ... P42212 12501176
    19361 1jc9:A (2.01) BS01 CA ? GO:0005576 ... Q9U8W8 11707569
    19362 1jcc:A (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    19363 1jcc:B (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    19364 1jcc:C (1.7) BS01 ZN ? GO:0005515 ... P69776 12741822
    19365 1jcg:A (3.1) BS01 ANP ? GO:0000902 ... Q9WZ57 11544518
    19366 1jci:A (1.9) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 11851415
    19367 1jcj:A (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    19368 1jcj:B (1.1) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    19369 1jcl:A (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    19370 1jcl:B (1.05) BS01 HPD 4.1.2.4 GO:0003824 ... P0A6L0 11598300
    19371 1jcm:P (2.1) BS01 PO4 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    19372 1jcm:P (2.1) BS02 137 4.1.1.48
    5.3.1.24
    GO:0004425 ... P00909 11856350
    19373 1jcn:A (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    19374 1jcn:B (2.5) BS01 CPR 1.1.1.205 GO:0000166 ... P20839 N/A
    19375 1jcq:A (2.3) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    19376 1jcq:A (2.3) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658 BindingDB: Kd=2.0nM
    19377 1jcq:A (2.3) BS03 739 2.5.1.58
    2.5.1.59
    GO:0004659 ... P49354 11687658
    19378 1jcq:B (2.3) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 11687658
    19379 1jcq:B (2.3) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 11687658
    19380 1jcq:B (2.3) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 11687658
    19381 1jcq:B (2.3) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 11687658
    19382 1jcq:B (2.3) BS05 739 2.5.1.58 GO:0003824 ... P49356 11687658
    19383 1jcr:A (2.0) BS01 FPP 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    19384 1jcr:B (2.0) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    19385 1jcr:B (2.0) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    19386 1jcr:B (2.0) BS03 FPP 2.5.1.58 GO:0003824 ... Q02293 11687658
    19387 1jcs:A (2.2) BS01 peptide 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    19388 1jcs:A (2.2) BS02 FII 2.5.1.58
    2.5.1.59
    GO:0004659 ... Q04631 11687658
    19389 1jcs:B (2.2) BS01 peptide 2.5.1.58 GO:0003824 ... Q02293 11687658
    19390 1jcs:B (2.2) BS02 ZN 2.5.1.58 GO:0003824 ... Q02293 11687658
    19391 1jcs:B (2.2) BS03 FII 2.5.1.58 GO:0003824 ... Q02293 11687658
    19392 1jct:A (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    19393 1jct:A (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    19394 1jct:B (2.75) BS01 MG 4.2.1.40 GO:0000287 ... P0AES2 11513584
    19395 1jct:B (2.75) BS02 GKR 4.2.1.40 GO:0000287 ... P0AES2 11513584
    19396 1jcv:A (1.55) BS01 CU 1.15.1.1 GO:0004784 ... P00445 8652572
    19397 1jcv:A (1.55) BS02 ZN 1.15.1.1 GO:0004784 ... P00445 8652572
    19398 1jcx:A (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    19399 1jcx:B (1.8) BS01 PAI 2.5.1.55 GO:0005737 ... O66496 11747443 MOAD: Ki=7uM
    PDBbind: -logKd/Ki=5.15, Ki=7.0uM
    19400 1jcy:A (1.9) BS01 R5P 2.5.1.55 GO:0005737 ... O66496 11747443

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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