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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19001 1j70:A (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    19002 1j70:B (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    19003 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    19004 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    19005 1j75:A (1.85) BS01 dna ? GO:0003677 ... Q9QY24 11524677 PDBbind: Kd=35nM
    19006 1j77:A (1.5) BS01 HEM 1.14.99.3 GO:0004392 ... Q9RGD9 11560504
    19007 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    19008 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    19009 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    19010 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    19011 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    19012 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    19013 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    19014 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    19015 1j7a:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    19016 1j7b:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    19017 1j7c:A (1.8) BS01 FES ? GO:0009055 ... P0A3C7 9287153
    19018 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    19019 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    19020 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    19021 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    19022 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    19023 1j7l:A (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19024 1j7l:A (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19025 1j7l:B (2.2) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19026 1j7l:B (2.2) BS02 ADP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19027 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    19028 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    19029 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    19030 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    19031 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    19032 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    19033 1j7u:A (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19034 1j7u:A (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19035 1j7u:B (2.4) BS01 MG 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19036 1j7u:B (2.4) BS02 ANP 2.7.1.95 GO:0005524 ... P0A3Y5 11467935
    19037 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    19038 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    19039 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    19040 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    19041 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    19042 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    19043 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    19044 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    19045 1j83:A (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    19046 1j83:B (1.7) BS01 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    19047 1j84:A (2.02) BS01 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    19048 1j84:A (2.02) BS02 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    19049 1j84:A (2.02) BS03 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    19050 1j84:A (2.02) BS04 BGC 3.2.1.4 GO:0008810 ... P94622 11733998
    19051 1j84:A (2.02) BS05 CA 3.2.1.4 GO:0008810 ... P94622 11733998
    19052 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    19053 1j8h:A (2.4) BS01 peptide ? GO:0006955 ... P01903 11877480
    19054 1j8h:B (2.4) BS01 peptide ? GO:0006955 ... P01911 11877480
    19055 1j8r:A (1.8) BS01 GAL ? GO:0007155 ... Q47450 11440716
    19056 1j8r:A (1.8) BS02 GLA ? GO:0007155 ... Q47450 11440716
    19057 1j8t:A (1.7) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    19058 1j8u:A (1.5) BS01 FE2 1.14.16.1 GO:0004497 ... P00439 11718561
    19059 1j8u:A (1.5) BS02 H4B 1.14.16.1 GO:0004497 ... P00439 11718561
    19060 1j8v:A (2.4) BS01 LAM 3.2.1.21 GO:0004553 ... Q9XEI3 12034895 MOAD: Ki=243.2uM
    19061 1j90:A (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    19062 1j90:B (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    19063 1j91:A (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    19064 1j91:B (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    19065 1j96:A (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 11514561
    19066 1j96:A (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 11514561
    19067 1j96:B (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 11514561
    19068 1j96:B (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20    		 GO:0004032 ... P52895 11514561
    19069 1j97:A (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    19070 1j97:B (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    19071 1j97:B (1.5) BS02 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    19072 1j97:B (1.5) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    19073 1j98:A (1.2) BS01 ZN 4.4.1.21 GO:0005506 ... O34667 11601850
    19074 1j99:A (1.99) BS01 HGI 2.8.2.14
    2.8.2.2    		 GO:0004027 ... Q06520 11988089
    19075 1j99:A (1.99) BS02 HGI 2.8.2.14
    2.8.2.2    		 GO:0004027 ... Q06520 11988089
    19076 1j99:A (1.99) BS03 AND 2.8.2.14
    2.8.2.2    		 GO:0004027 ... Q06520 11988089
    19077 1j9b:A (1.26) BS01 SO4 1.20.4.1 GO:0008794 ... P08692 11709171
    19078 1j9b:A (1.26) BS02 TAS 1.20.4.1 GO:0008794 ... P08692 11709171
    19079 1j9b:A (1.26) BS03 TAS 1.20.4.1 GO:0008794 ... P08692 11709171
    19080 1j9c:H (2.9) BS01 0Z6 3.4.21.21 GO:0004252 ... P08709 N/A
    19081 1j9c:H (2.9) BS02 CA 3.4.21.21 GO:0004252 ... P08709 N/A
    19082 1j9q:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19083 1j9q:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19084 1j9q:A (1.65) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19085 1j9q:A (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19086 1j9q:B (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19087 1j9q:B (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19088 1j9q:B (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19089 1j9q:B (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19090 1j9q:C (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19091 1j9q:C (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19092 1j9q:C (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19093 1j9q:C (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19094 1j9r:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19095 1j9r:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19096 1j9r:A (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19097 1j9r:A (2.0) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19098 1j9r:B (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19099 1j9r:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19100 1j9r:B (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19101 1j9r:B (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19102 1j9r:B (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19103 1j9r:C (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19104 1j9r:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19105 1j9r:C (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19106 1j9r:C (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19107 1j9r:C (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19108 1j9s:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19109 1j9s:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19110 1j9s:A (1.9) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19111 1j9s:A (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19112 1j9s:B (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19113 1j9s:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19114 1j9s:B (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19115 1j9s:B (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19116 1j9s:C (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19117 1j9s:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19118 1j9s:C (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19119 1j9t:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19120 1j9t:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19121 1j9t:A (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19122 1j9t:B (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    19123 1j9t:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19124 1j9t:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19125 1j9t:B (1.95) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19126 1j9t:C (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19127 1j9t:C (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19128 1j9t:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    19129 1j9w:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 12009884
    19130 1j9w:B (2.6) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00915 12009884
    19131 1j9y:A (1.85) BS01 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    19132 1j9y:A (1.85) BS02 ZN 3.2.1.78 GO:0000272 ... P49424 11382747
    19133 1j9z:A (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19134 1j9z:A (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    19135 1j9z:A (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19136 1j9z:B (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19137 1j9z:B (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    19138 1j9z:B (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19139 1ja0:A (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19140 1ja0:A (2.6) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    19141 1ja0:A (2.6) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19142 1ja0:B (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19143 1ja0:B (2.6) BS02 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19144 1ja1:A (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19145 1ja1:A (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    19146 1ja1:A (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19147 1ja1:B (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    19148 1ja1:B (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    19149 1ja1:B (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    19150 1ja8:A (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    19151 1ja8:B (2.12) BS01 MN 1.15.1.1 GO:0004784 ... P04179 11580280
    19152 1jac:A (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    19153 1jac:A (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    19154 1jac:A (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    19155 1jac:C (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    19156 1jac:C (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    19157 1jac:C (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    19158 1jac:E (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    19159 1jac:E (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    19160 1jac:E (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    19161 1jac:G (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    19162 1jac:G (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    19163 1jac:G (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    19164 1jae:A (1.65) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9600843
    19165 1jae:A (1.65) BS02 CL 3.2.1.1 GO:0003824 ... P56634 9600843
    19166 1jaf:A (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    19167 1jaf:B (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    19168 1jah:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9102473
    19169 1jai:A (1.8) BS01 MN 3.6.5.2 GO:0003924 ... P01112 9102473
    19170 1jak:A (1.75) BS01 CL 3.2.1.52 GO:0004553 ... O85361 11522797
    19171 1jak:A (1.75) BS02 IFG 3.2.1.52 GO:0004553 ... O85361 11522797 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    19172 1jan:A (2.5) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8307185
    19173 1jan:A (2.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    19174 1jan:A (2.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    19175 1jan:A (2.5) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    19176 1jan:A (2.5) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    19177 1jao:A (2.4) BS01 0D3 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    19178 1jao:A (2.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    19179 1jao:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    19180 1jao:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    19181 1jao:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    19182 1jap:A (1.82) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8137810
    19183 1jap:A (1.82) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    19184 1jap:A (1.82) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    19185 1jap:A (1.82) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    19186 1jap:A (1.82) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    19187 1jaq:A (2.4) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    19188 1jaq:A (2.4) BS02 01S 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    BindingDB: Ki=121000nM
    19189 1jaq:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    19190 1jaq:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    19191 1jaq:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    19192 1jaw:A (2.7) BS01 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    19193 1jaw:A (2.7) BS02 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    19194 1jay:A (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    19195 1jay:A (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    19196 1jay:B (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    19197 1jay:B (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    19198 1jaz:A (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    19199 1jaz:B (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    19200 1jb0:A (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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