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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17801 1iqp:A (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    17802 1iqp:B (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    17803 1iqp:C (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    17804 1iqp:E (2.8) BS01 ADP ? GO:0003677 ... Q8U4J3 11545747
    17805 1iqr:A (2.1) BS01 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    17806 1iqu:A (2.2) BS01 TDR 4.1.99.3 GO:0000166 ... P61497 11707580
    17807 1iqu:A (2.2) BS02 FAD 4.1.99.3 GO:0000166 ... P61497 11707580
    17808 1iqx:A (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    17809 1iqx:B (2.0) BS01 CO 1.4.3.21 GO:0005507 ... P46881 12537504
    17810 1ir1:A (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    17811 1ir1:A (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    17812 1ir1:B (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    17813 1ir1:B (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    17814 1ir1:C (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    17815 1ir1:C (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    17816 1ir1:D (1.8) BS01 MG 4.1.1.39 GO:0000287 ... P00875 11866526
    17817 1ir1:D (1.8) BS02 CAP 4.1.1.39 GO:0000287 ... P00875 11866526
    17818 1ir2:A (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17819 1ir2:A (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17820 1ir2:A (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17821 1ir2:B (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17822 1ir2:B (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17823 1ir2:B (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17824 1ir2:C (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17825 1ir2:C (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17826 1ir2:C (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17827 1ir2:D (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17828 1ir2:D (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17829 1ir2:D (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17830 1ir2:E (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17831 1ir2:E (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17832 1ir2:E (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17833 1ir2:F (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17834 1ir2:F (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17835 1ir2:F (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17836 1ir2:G (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17837 1ir2:G (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17838 1ir2:G (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17839 1ir2:H (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17840 1ir2:H (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17841 1ir2:H (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17842 1ir2:S (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17843 1ir2:S (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17844 1ir2:S (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17845 1ir2:T (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17846 1ir2:T (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17847 1ir2:T (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17848 1ir2:U (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17849 1ir2:U (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17850 1ir2:U (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17851 1ir2:V (1.84) BS01 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17852 1ir2:V (1.84) BS02 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17853 1ir2:V (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17854 1ir2:W (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17855 1ir2:W (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17856 1ir2:W (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17857 1ir2:X (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17858 1ir2:X (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17859 1ir2:X (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17860 1ir2:Y (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17861 1ir2:Y (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17862 1ir2:Y (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17863 1ir2:Z (1.84) BS01 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17864 1ir2:Z (1.84) BS02 MG 4.1.1.39 GO:0000287 ... P00877 11866526
    17865 1ir2:Z (1.84) BS03 CAP 4.1.1.39 GO:0000287 ... P00877 11866526
    17866 1ir3:A (1.9) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 9312016
    17867 1ir3:A (1.9) BS02 MG 2.7.10.1 GO:0004672 ... P06213 9312016
    17868 1ir3:A (1.9) BS03 ANP 2.7.10.1 GO:0004672 ... P06213 9312016
    17869 1irb:A (1.9) BS01 CA 3.1.1.4 GO:0002227 ... P00593 8810924
    17870 1irc:A (2.17) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8204590
    17871 1irc:A (2.17) BS02 IMD 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 8204590
    17872 1ird:A (1.25) BS01 HEM ? GO:0004601 ... P69905 N/A
    17873 1ird:B (1.25) BS01 HEM ? GO:0004601 ... P68871 N/A
    17874 1ire:A (1.8) BS01 CO 4.2.1.84 GO:0003824 ... Q7SID2 11700034
    17875 1iri:A (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    17876 1iri:B (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    17877 1iri:C (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    17878 1iri:D (2.4) BS01 E4P 5.3.1.9 GO:0001701 ... P06744 12054796
    17879 1irj:A (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17880 1irj:A (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17881 1irj:B (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17882 1irj:B (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17883 1irj:B (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    17884 1irj:C (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17885 1irj:C (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17886 1irj:D (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17887 1irj:D (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17888 1irj:D (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    17889 1irj:E (2.1) BS01 CPS ? GO:0002523 ... P06702 11851337
    17890 1irj:E (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17891 1irj:E (2.1) BS03 CA ? GO:0002523 ... P06702 11851337
    17892 1irj:F (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17893 1irj:F (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17894 1irj:G (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17895 1irj:G (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17896 1irj:G (2.1) BS03 CPS ? GO:0002523 ... P06702 11851337
    17897 1irj:H (2.1) BS01 CA ? GO:0002523 ... P06702 11851337
    17898 1irj:H (2.1) BS02 CA ? GO:0002523 ... P06702 11851337
    17899 1irn:A (1.2) BS01 ZN ? GO:0005506 ... P00268 8799113
    17900 1iro:A (1.1) BS01 FE ? GO:0005506 ... P00268 8799113
    17901 1irs:A (-1.00) BS01 peptide ? GO:0005158 ... P35568 8599766
    17902 1iru:1 (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    17903 1iru:1 (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    17904 1iru:A (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    17905 1iru:B (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    17906 1iru:C (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    17907 1iru:D (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    17908 1iru:G (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    17909 1iru:G (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    17910 1iru:I (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    17911 1iru:J (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    17912 1iru:J (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    17913 1iru:K (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    17914 1iru:L (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    17915 1iru:M (2.75) BS01 MG ? GO:0005839 ... Q2TBX6 12015144
    17916 1iru:M (2.75) BS02 MG ? GO:0005839 ... Q2TBX6 12015144
    17917 1iru:O (2.75) BS01 MG ? GO:0000502 ... Q2YDE4 12015144
    17918 1iru:P (2.75) BS01 MG ? GO:0000502 ... Q3T0Y5 12015144
    17919 1iru:Q (2.75) BS01 MG ? GO:0000502 ... Q3ZCK9 12015144
    17920 1iru:R (2.75) BS01 MG ? GO:0000502 ... Q3ZBG0 12015144
    17921 1iru:U (2.75) BS01 MG ? GO:0000502 ... Q58DU5 12015144
    17922 1iru:U (2.75) BS02 MG ? GO:0000502 ... Q58DU5 12015144
    17923 1iru:W (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q2TBP0 12015144
    17924 1iru:X (2.75) BS01 MG ? GO:0000502 ... P33672 12015144
    17925 1iru:X (2.75) BS02 MG ? GO:0000502 ... P33672 12015144
    17926 1iru:Y (2.75) BS01 MG ? GO:0000502 ... Q5E9K0 12015144
    17927 1iru:Z (2.75) BS01 MG 3.4.25.1 GO:0004298 ... Q32KL2 12015144
    17928 1irv:A (1.9) BS01 HEM ? GO:0005515 ... P00044 8718869
    17929 1irw:A (2.0) BS01 HEM ? GO:0005515 ... P00044 8718869
    17930 1irx:A (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    17931 1irx:A (2.6) BS02 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    17932 1irx:B (2.6) BS01 ZN 6.1.1.6 GO:0000049 ... O57963 11887185
    17933 1is2:A (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    17934 1is2:A (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    17935 1is2:B (2.2) BS01 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    17936 1is2:B (2.2) BS02 FAD 1.3.3.6 GO:0000038 ... P07872 11872165
    17937 1is7:K (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17938 1is7:K (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17939 1is7:L (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17940 1is7:L (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17941 1is7:M (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17942 1is7:M (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17943 1is7:N (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17944 1is7:N (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17945 1is7:O (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17946 1is7:O (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17947 1is7:P (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17948 1is7:P (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17949 1is7:Q (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17950 1is7:Q (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17951 1is7:R (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17952 1is7:R (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17953 1is7:S (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17954 1is7:S (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17955 1is7:T (2.8) BS01 PHE ? GO:0004857 ... P70552 11818540
    17956 1is7:T (2.8) BS02 PHE ? GO:0004857 ... P70552 11818540
    17957 1is8:A (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17958 1is8:B (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17959 1is8:C (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17960 1is8:D (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17961 1is8:E (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17962 1is8:F (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17963 1is8:G (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17964 1is8:H (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17965 1is8:I (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17966 1is8:J (2.7) BS01 ZN 3.5.4.16 GO:0003924 ... P22288 11818540
    17967 1is8:K (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17968 1is8:K (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17969 1is8:L (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17970 1is8:L (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17971 1is8:M (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17972 1is8:M (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17973 1is8:N (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17974 1is8:N (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17975 1is8:O (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17976 1is8:O (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17977 1is8:P (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17978 1is8:P (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17979 1is8:Q (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17980 1is8:Q (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17981 1is8:R (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17982 1is8:R (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17983 1is8:S (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17984 1is8:S (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17985 1is8:T (2.7) BS01 PHE ? GO:0004857 ... P70552 11818540
    17986 1is8:T (2.7) BS02 PHE ? GO:0004857 ... P70552 11818540
    17987 1isa:A (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17988 1isa:B (1.8) BS01 FE2 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17989 1isb:A (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17990 1isb:B (1.85) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17991 1isc:A (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17992 1isc:A (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17993 1isc:B (1.8) BS01 FE 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17994 1isc:B (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    17995 1isg:A (2.6) BS01 AGS 3.2.2.6 GO:0001931 ... Q10588 11866528
    17996 1isg:B (2.6) BS01 AGS 3.2.2.6 GO:0001931 ... Q10588 11866528
    17997 1ish:A (2.4) BS01 ENP 3.2.2.6 GO:0001931 ... Q10588 11866528
    17998 1ish:B (2.4) BS01 ENP 3.2.2.6 GO:0001931 ... Q10588 11866528
    17999 1isi:A (2.1) BS01 NCA 3.2.2.6 GO:0001931 ... Q10588 11866528
    18000 1isi:A (2.1) BS02 ENQ 3.2.2.6 GO:0001931 ... Q10588 11866528

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218