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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13201 1gtf:A (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13202 1gtf:A (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13203 1gtf:B (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13204 1gtf:B (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13205 1gtf:C (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13206 1gtf:C (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13207 1gtf:D (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13208 1gtf:D (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13209 1gtf:E (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13210 1gtf:E (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13211 1gtf:F (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13212 1gtf:F (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13213 1gtf:G (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13214 1gtf:G (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13215 1gtf:H (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13216 1gtf:H (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13217 1gtf:I (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13218 1gtf:I (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13219 1gtf:J (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13220 1gtf:J (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13221 1gtf:K (1.75) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13222 1gtf:K (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13223 1gtf:L (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13224 1gtf:L (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13225 1gtf:L (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13226 1gtf:M (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13227 1gtf:M (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13228 1gtf:M (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13229 1gtf:N (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13230 1gtf:N (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13231 1gtf:N (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13232 1gtf:O (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13233 1gtf:O (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13234 1gtf:O (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13235 1gtf:P (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13236 1gtf:P (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13237 1gtf:P (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13238 1gtf:Q (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13239 1gtf:Q (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13240 1gtf:Q (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13241 1gtf:R (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13242 1gtf:R (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13243 1gtf:R (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13244 1gtf:S (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13245 1gtf:S (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13246 1gtf:S (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13247 1gtf:T (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13248 1gtf:T (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13249 1gtf:T (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13250 1gtf:U (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13251 1gtf:U (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13252 1gtf:U (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13253 1gtf:V (1.75) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13254 1gtf:V (1.75) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13255 1gtf:V (1.75) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13256 1gtg:1 (2.3) BS01 CA ? GO:0004252 ... Q8RR56 12057200
    13257 1gth:A (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13258 1gth:A (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13259 1gth:A (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13260 1gth:A (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13261 1gth:A (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    13262 1gth:A (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    13263 1gth:A (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    13264 1gth:A (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    13265 1gth:B (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13266 1gth:B (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13267 1gth:B (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13268 1gth:B (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13269 1gth:B (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    13270 1gth:B (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    13271 1gth:B (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    13272 1gth:B (2.25) BS08 IDH 1.3.1.2 GO:0000166 ... Q28943 11796730
    13273 1gth:C (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13274 1gth:C (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13275 1gth:C (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13276 1gth:C (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13277 1gth:C (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    13278 1gth:C (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    13279 1gth:C (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    13280 1gth:C (2.25) BS08 IUR 1.3.1.2 GO:0000166 ... Q28943 11796730
    13281 1gth:D (2.25) BS01 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13282 1gth:D (2.25) BS02 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13283 1gth:D (2.25) BS03 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13284 1gth:D (2.25) BS04 SF4 1.3.1.2 GO:0000166 ... Q28943 11796730
    13285 1gth:D (2.25) BS05 FMN 1.3.1.2 GO:0000166 ... Q28943 11796730
    13286 1gth:D (2.25) BS06 FAD 1.3.1.2 GO:0000166 ... Q28943 11796730
    13287 1gth:D (2.25) BS07 NDP 1.3.1.2 GO:0000166 ... Q28943 11796730
    13288 1gth:D (2.25) BS08 URA 1.3.1.2 GO:0000166 ... Q28943 11796730
    13289 1gti:A (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13290 1gti:B (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13291 1gti:C (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13292 1gti:D (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13293 1gti:E (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13294 1gti:F (3.0) BS01 GTB 2.5.1.18 GO:0000302 ... P19157 9446594
    13295 1gtj:1 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    13296 1gtj:1 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    13297 1gtj:2 (1.75) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    13298 1gtj:2 (1.75) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    13299 1gtk:A (1.66) BS01 DPM 2.5.1.61 GO:0004418 ... P06983 12555854
    13300 1gtl:1 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    13301 1gtl:1 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    13302 1gtl:2 (2.8) BS01 peptide ? GO:0004252 ... Q8RR56 12057200
    13303 1gtl:2 (2.8) BS02 CA ? GO:0004252 ... Q8RR56 12057200
    13304 1gtn:A (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13305 1gtn:A (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13306 1gtn:A (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13307 1gtn:B (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13308 1gtn:B (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13309 1gtn:C (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13310 1gtn:C (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13311 1gtn:D (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13312 1gtn:D (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13313 1gtn:E (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13314 1gtn:E (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13315 1gtn:F (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13316 1gtn:F (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13317 1gtn:G (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13318 1gtn:G (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13319 1gtn:H (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13320 1gtn:H (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13321 1gtn:I (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13322 1gtn:I (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13323 1gtn:J (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13324 1gtn:J (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13325 1gtn:K (2.5) BS01 TRP ? GO:0003723 ... Q9X6J6 11914485
    13326 1gtn:K (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13327 1gtn:L (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13328 1gtn:L (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13329 1gtn:L (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13330 1gtn:M (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13331 1gtn:M (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13332 1gtn:M (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13333 1gtn:N (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13334 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13335 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13336 1gtn:O (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13337 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13338 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13339 1gtn:P (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13340 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13341 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13342 1gtn:Q (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13343 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13344 1gtn:Q (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13345 1gtn:R (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13346 1gtn:R (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13347 1gtn:R (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13348 1gtn:S (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13349 1gtn:S (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13350 1gtn:S (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13351 1gtn:T (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13352 1gtn:T (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13353 1gtn:T (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13354 1gtn:U (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13355 1gtn:U (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13356 1gtn:U (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13357 1gtn:V (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    13358 1gtn:V (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    13359 1gtn:V (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    13360 1gtq:A (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    13361 1gtq:B (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    13362 1gtr:A (2.5) BS01 rna 6.1.1.18 GO:0000166 ... P00962 1857417
    13363 1gtr:A (2.5) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 1857417
    13364 1gts:A (2.8) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8364025
    13365 1gts:A (2.8) BS02 AMP 6.1.1.18 GO:0000166 ... P00962 8364025
    13366 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    13367 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    13368 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    13369 1gtt:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    13370 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13371 1gtv:A (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13372 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13373 1gtv:A (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13374 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13375 1gtv:B (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13376 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13377 1gtv:B (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    13378 1gtw:A (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    13379 1gtw:A (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    13380 1gtw:B (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    13381 1gtw:B (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    13382 1gtz:A (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13383 1gtz:B (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13384 1gtz:C (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13385 1gtz:D (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13386 1gtz:E (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13387 1gtz:F (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13388 1gtz:G (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13389 1gtz:H (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13390 1gtz:I (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13391 1gtz:J (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13392 1gtz:K (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13393 1gtz:L (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    13394 1gu1:A (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    13395 1gu1:A (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    13396 1gu1:B (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    13397 1gu1:B (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    13398 1gu1:C (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    13399 1gu1:C (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    13400 1gu1:D (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218