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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    711801 8yk5:A (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    711802 8yk5:B (2.1) BS01 CA 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    711803 8yk5:B (2.1) BS02 GOL 3.1.4.3 GO:0004629 ... A0A077KPD5 38503170
    711804 8ykv:R (2.48) BS01 A1LYV ? GO:0002001 ... Q9BXA5 38834763
    711805 8yky:R (2.99) BS01 A1AEI N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    711806 8yky:R (2.99) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    711807 8ylb:A (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711808 8ylb:A (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711809 8ylb:B (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711810 8ylb:B (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711811 8ylb:C (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711812 8ylb:C (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711813 8ylb:D (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711814 8ylb:D (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711815 8ylb:E (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711816 8ylb:E (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711817 8ylb:F (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711818 8ylb:F (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711819 8ylb:G (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711820 8ylb:G (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711821 8ylb:H (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711822 8ylb:H (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711823 8ylb:I (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711824 8ylb:I (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711825 8ylb:J (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711826 8ylb:J (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711827 8ylb:K (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711828 8ylb:K (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711829 8ylb:L (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711830 8ylb:L (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711831 8ylb:M (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711832 8ylb:M (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711833 8ylb:N (2.15) BS01 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711834 8ylb:N (2.15) BS02 A1LZA 3.4.21.92 GO:0004176 ... Q16740 38620134
    711835 8yle:A (1.86) BS01 ACP 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    711836 8yle:A (1.86) BS02 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    711837 8yle:A (1.86) BS03 ZN 3.1.-.-
    5.6.2.4    		 GO:0003676 ... Q14191 N/A
    711838 8yoo:LA (2.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    711839 8yoo:LA (2.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    711840 8yoo:LA (2.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    711841 8yoo:LB (2.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    711842 8yoo:LC (2.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    711843 8yoo:LC (2.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    711844 8yoo:LD (2.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    711845 8yoo:LD (2.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    711846 8yoo:LE (2.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    711847 8yoo:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    711848 8yoo:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    711849 8yoo:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    711850 8yoo:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    711851 8yoo:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    711852 8yoo:LI (2.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    711853 8yoo:LI (2.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    711854 8yoo:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    711855 8yoo:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    711856 8yoo:LL (2.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    711857 8yoo:LL (2.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    711858 8yoo:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    711859 8yoo:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    711860 8yoo:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    711861 8yoo:LO (2.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    711862 8yoo:LP (2.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    711863 8yoo:LP (2.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    711864 8yoo:LQ (2.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    711865 8yoo:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    711866 8yoo:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    711867 8yoo:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    711868 8yoo:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    711869 8yoo:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    711870 8yoo:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    711871 8yoo:LU (2.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    711872 8yoo:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    711873 8yoo:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    711874 8yoo:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    711875 8yoo:LX (2.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    711876 8yoo:LX (2.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    711877 8yoo:LY (2.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    711878 8yoo:LY (2.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    711879 8yoo:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    711880 8yoo:La (2.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    711881 8yoo:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    711882 8yoo:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    711883 8yoo:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    711884 8yoo:Le (2.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    711885 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    711886 8yoo:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    711887 8yoo:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    711888 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    711889 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    711890 8yoo:Lh (2.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    711891 8yoo:Lh (2.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    711892 8yoo:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    711893 8yoo:Lj (2.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    711894 8yoo:Lj (2.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    711895 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    711896 8yoo:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    711897 8yoo:Ll (2.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    711898 8yoo:Ll (2.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    711899 8yoo:Lm (2.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    711900 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    711901 8yoo:Lo (2.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    711902 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    711903 8yoo:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    711904 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    711905 8yoo:Lr (2.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    711906 8yoo:Ls (2.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    711907 8yoo:Lt (2.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    711908 8yoo:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    711909 8yoo:SB (2.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    711910 8yoo:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    711911 8yoo:SD (2.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    711912 8yoo:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    711913 8yoo:SF (2.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    711914 8yoo:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    711915 8yoo:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    711916 8yoo:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    711917 8yoo:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    711918 8yoo:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    711919 8yoo:SK (2.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    711920 8yoo:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    711921 8yoo:SL (2.0) BS02 rna N/A GO:0002181 ... P62280 38942792
    711922 8yoo:SM (2.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    711923 8yoo:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    711924 8yoo:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 38942792
    711925 8yoo:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    711926 8yoo:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    711927 8yoo:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    711928 8yoo:SR (2.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    711929 8yoo:SS (2.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    711930 8yoo:ST (2.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    711931 8yoo:SU (2.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    711932 8yoo:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    711933 8yoo:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    711934 8yoo:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    711935 8yoo:SZ (2.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    711936 8yoo:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    711937 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    711938 8yoo:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    711939 8yoo:Sc (2.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    711940 8yoo:Sd (2.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    711941 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    711942 8yoo:Sf (2.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    711943 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    711944 8yoo:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    711945 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    711946 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    711947 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    711948 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    711949 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    711950 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    711951 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    711952 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    711953 8yop:LE (2.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    711954 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    711955 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    711956 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    711957 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    711958 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    711959 8yop:LI (2.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    711960 8yop:LI (2.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    711961 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    711962 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    711963 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    711964 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    711965 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    711966 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    711967 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    711968 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    711969 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    711970 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    711971 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    711972 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    711973 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    711974 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    711975 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    711976 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    711977 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    711978 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    711979 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    711980 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    711981 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    711982 8yop:LX (2.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    711983 8yop:LX (2.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    711984 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    711985 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    711986 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    711987 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    711988 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    711989 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    711990 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    711991 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    711992 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    711993 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    711994 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    711995 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    711996 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    711997 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    711998 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    711999 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    712000 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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