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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    711401 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    711402 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    711403 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    711404 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    711405 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    711406 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    711407 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    711408 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    711409 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    711410 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    711411 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    711412 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711413 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711414 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711415 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711416 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711417 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711418 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711419 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711420 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711421 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711422 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711423 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711424 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    711425 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711426 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711427 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711428 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711429 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711430 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711431 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711432 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711433 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711434 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711435 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711436 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711437 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711438 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711439 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711440 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711441 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    711442 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    711443 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    711444 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    711445 8y36:1 (2.65) BS01 rna N/A GO:0005737 ... P66232 38992047
    711446 8y36:2 (2.65) BS01 rna N/A GO:0005840 ... P66254 38992047
    711447 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... P66277 38992047
    711448 8y36:4 (2.65) BS01 rna N/A GO:0005737 ... P66300 38992047
    711449 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    711450 8y36:D (2.65) BS01 rna N/A GO:0003735 ... P60450 38992047
    711451 8y36:E (2.65) BS01 rna N/A GO:0003735 ... P61060 38992047
    711452 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    711453 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    711454 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    711455 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    711456 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    711457 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    711458 8y36:K (2.65) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    711459 8y36:K (2.65) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    711460 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    711461 8y36:M (2.65) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    711462 8y36:M (2.65) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    711463 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    711464 8y36:O (2.65) BS01 rna N/A GO:0000027 ... P66109 38992047
    711465 8y36:P (2.65) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    711466 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    711467 8y36:R (2.65) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    711468 8y36:S (2.65) BS01 rna N/A GO:0005840 ... P60736 38992047
    711469 8y36:V (2.65) BS01 rna N/A GO:0005840 ... P66154 38992047
    711470 8y36:W (2.65) BS01 rna N/A GO:0005840 ... P66174 38992047
    711471 8y36:X (2.65) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    711472 8y36:X (2.65) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    711473 8y37:1 (2.53) BS01 rna N/A GO:0005737 ... P66232 38992047
    711474 8y37:2 (2.53) BS01 rna N/A GO:0005840 ... P66254 38992047
    711475 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... P66277 38992047
    711476 8y37:4 (2.53) BS01 rna N/A GO:0005737 ... P66300 38992047
    711477 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60433 38992047
    711478 8y37:D (2.53) BS01 rna N/A GO:0003735 ... P60450 38992047
    711479 8y37:E (2.53) BS01 rna N/A GO:0003735 ... P61060 38992047
    711480 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    711481 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    711482 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    711483 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    711484 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    711485 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    711486 8y37:K (2.53) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    711487 8y37:K (2.53) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    711488 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    711489 8y37:M (2.53) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    711490 8y37:M (2.53) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    711491 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    711492 8y37:O (2.53) BS01 rna N/A GO:0000027 ... P66109 38992047
    711493 8y37:P (2.53) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    711494 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    711495 8y37:R (2.53) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    711496 8y37:S (2.53) BS01 rna N/A GO:0005840 ... P60736 38992047
    711497 8y37:V (2.53) BS01 rna N/A GO:0005840 ... P66154 38992047
    711498 8y37:W (2.53) BS01 rna N/A GO:0005840 ... P66174 38992047
    711499 8y37:X (2.53) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    711500 8y37:X (2.53) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    711501 8y38:1 (2.58) BS01 rna N/A GO:0005737 ... P66232 38992047
    711502 8y38:2 (2.58) BS01 rna N/A GO:0005840 ... P66254 38992047
    711503 8y38:3 (2.58) BS01 rna N/A GO:0003735 ... P66277 38992047
    711504 8y38:4 (2.58) BS01 rna N/A GO:0005737 ... P66300 38992047
    711505 8y38:C (2.58) BS01 rna N/A GO:0002181 ... P60433 38992047
    711506 8y38:D (2.58) BS01 rna N/A GO:0003735 ... P60450 38992047
    711507 8y38:E (2.58) BS01 rna N/A GO:0003735 ... P61060 38992047
    711508 8y38:F (2.58) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    711509 8y38:F (2.58) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    711510 8y38:G (2.58) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    711511 8y38:H (2.58) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    711512 8y38:I (2.58) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    711513 8y38:I (2.58) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    711514 8y38:J (2.58) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    711515 8y38:K (2.58) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    711516 8y38:K (2.58) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    711517 8y38:L (2.58) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    711518 8y38:M (2.58) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    711519 8y38:M (2.58) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    711520 8y38:N (2.58) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    711521 8y38:O (2.58) BS01 rna N/A GO:0000027 ... P66109 38992047
    711522 8y38:P (2.58) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    711523 8y38:Q (2.58) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    711524 8y38:R (2.58) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    711525 8y38:S (2.58) BS01 rna N/A GO:0005840 ... P60736 38992047
    711526 8y38:V (2.58) BS01 rna N/A GO:0005840 ... P66154 38992047
    711527 8y38:W (2.58) BS01 rna N/A GO:0005840 ... P66174 38992047
    711528 8y38:X (2.58) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    711529 8y38:X (2.58) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    711530 8y38:b (2.58) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    711531 8y38:c (2.58) BS01 rna N/A GO:0003729 ... P66554 38992047
    711532 8y38:d (2.58) BS01 rna N/A GO:0003735 ... P66564 38992047
    711533 8y38:e (2.58) BS01 rna N/A GO:0005737 ... P66580 38992047
    711534 8y38:f (2.58) BS01 rna N/A GO:0003735 ... P66596 38992047
    711535 8y38:g (2.58) BS01 rna N/A GO:0000028 ... P66617 38992047
    711536 8y38:h (2.58) BS01 rna N/A GO:0003735 ... P66631 38992047
    711537 8y38:i (2.58) BS01 rna N/A GO:0003723 ... P66647 38992047
    711538 8y38:j (2.58) BS01 rna N/A GO:0000049 ... P66335 38992047
    711539 8y38:k (2.58) BS01 rna N/A GO:0005840 ... P66358 38992047
    711540 8y38:m (2.58) BS01 rna N/A GO:0000049 ... P66389 38992047
    711541 8y38:n (2.58) BS01 rna N/A GO:0003735 ... P66413 38992047
    711542 8y38:o (2.58) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    711543 8y38:p (2.58) BS01 rna N/A GO:0003735 ... P66441 38992047
    711544 8y38:q (2.58) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    711545 8y38:r (2.58) BS01 rna N/A GO:0003735 ... P66469 38992047
    711546 8y38:t (2.58) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    711547 8y39:1 (3.6) BS01 rna N/A GO:0005737 ... P66232 38992047
    711548 8y39:2 (3.6) BS01 rna N/A GO:0005840 ... P66254 38992047
    711549 8y39:3 (3.6) BS01 rna N/A GO:0003735 ... P66277 38992047
    711550 8y39:4 (3.6) BS01 rna N/A GO:0005737 ... P66300 38992047
    711551 8y39:C (3.6) BS01 rna N/A GO:0002181 ... P60433 38992047
    711552 8y39:D (3.6) BS01 rna N/A GO:0003735 ... P60450 38992047
    711553 8y39:E (3.6) BS01 rna N/A GO:0003735 ... P61060 38992047
    711554 8y39:F (3.6) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    711555 8y39:F (3.6) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    711556 8y39:G (3.6) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    711557 8y39:H (3.6) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    711558 8y39:I (3.6) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    711559 8y39:I (3.6) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    711560 8y39:J (3.6) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    711561 8y39:K (3.6) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    711562 8y39:K (3.6) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    711563 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    711564 8y39:M (3.6) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    711565 8y39:M (3.6) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    711566 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    711567 8y39:O (3.6) BS01 rna N/A GO:0000027 ... P66109 38992047
    711568 8y39:P (3.6) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    711569 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    711570 8y39:R (3.6) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    711571 8y39:S (3.6) BS01 rna N/A GO:0005840 ... P60736 38992047
    711572 8y39:V (3.6) BS01 rna N/A GO:0005840 ... P66154 38992047
    711573 8y39:W (3.6) BS01 rna N/A GO:0005840 ... P66174 38992047
    711574 8y39:X (3.6) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    711575 8y39:X (3.6) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    711576 8y39:b (3.6) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    711577 8y39:c (3.6) BS01 rna N/A GO:0003729 ... P66554 38992047
    711578 8y39:d (3.6) BS01 rna N/A GO:0003735 ... P66564 38992047
    711579 8y39:e (3.6) BS01 rna N/A GO:0005737 ... P66580 38992047
    711580 8y39:f (3.6) BS01 rna N/A GO:0003735 ... P66596 38992047
    711581 8y39:g (3.6) BS01 rna N/A GO:0000028 ... P66617 38992047
    711582 8y39:h (3.6) BS01 rna N/A GO:0003735 ... P66631 38992047
    711583 8y39:i (3.6) BS01 rna N/A GO:0003723 ... P66647 38992047
    711584 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    711585 8y39:k (3.6) BS01 rna N/A GO:0005840 ... P66358 38992047
    711586 8y39:m (3.6) BS01 rna N/A GO:0000049 ... P66389 38992047
    711587 8y39:n (3.6) BS01 rna N/A GO:0003735 ... P66413 38992047
    711588 8y39:o (3.6) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    711589 8y39:p (3.6) BS01 rna N/A GO:0003735 ... P66441 38992047
    711590 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    711591 8y39:r (3.6) BS01 rna N/A GO:0003735 ... P66469 38992047
    711592 8y39:t (3.6) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    711593 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    711594 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    711595 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    711596 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    711597 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    711598 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    711599 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    711600 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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