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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    711201 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    711202 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    711203 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    711204 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    711205 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    711206 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    711207 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    711208 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    711209 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    711210 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    711211 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    711212 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    711213 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    711214 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    711215 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    711216 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    711217 8y0w:LE (3.4) BS01 rna ? GO:0000027 ... Q02878 38698775
    711218 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    711219 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    711220 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    711221 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    711222 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    711223 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    711224 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    711225 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    711226 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    711227 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    711228 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    711229 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    711230 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    711231 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    711232 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    711233 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    711234 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    711235 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    711236 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    711237 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    711238 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    711239 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    711240 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    711241 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    711242 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    711243 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    711244 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    711245 8y0w:LX (3.4) BS01 rna ? GO:0000027 ... P62750 38698775
    711246 8y0w:LX (3.4) BS02 rna ? GO:0000027 ... P62750 38698775
    711247 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    711248 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    711249 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    711250 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    711251 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    711252 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    711253 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    711254 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    711255 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    711256 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    711257 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    711258 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    711259 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    711260 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    711261 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    711262 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    711263 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    711264 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    711265 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    711266 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    711267 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    711268 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    711269 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    711270 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    711271 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    711272 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    711273 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    711274 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    711275 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    711276 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    711277 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    711278 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    711279 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    711280 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    711281 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    711282 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    711283 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    711284 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    711285 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    711286 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    711287 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    711288 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    711289 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    711290 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    711291 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    711292 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    711293 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    711294 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    711295 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    711296 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    711297 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    711298 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    711299 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    711300 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    711301 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    711302 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    711303 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    711304 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    711305 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    711306 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    711307 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    711308 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    711309 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    711310 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    711311 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    711312 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    711313 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    711314 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    711315 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    711316 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    711317 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    711318 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    711319 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    711320 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    711321 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    711322 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    711323 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    711324 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    711325 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    711326 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    711327 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    711328 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    711329 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    711330 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    711331 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    711332 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    711333 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    711334 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    711335 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    711336 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    711337 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    711338 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    711339 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    711340 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    711341 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    711342 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    711343 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    711344 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    711345 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    711346 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    711347 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    711348 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    711349 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    711350 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    711351 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    711352 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    711353 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    711354 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    711355 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    711356 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    711357 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    711358 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    711359 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    711360 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    711361 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    711362 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    711363 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    711364 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    711365 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    711366 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    711367 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    711368 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    711369 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    711370 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    711371 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    711372 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    711373 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    711374 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    711375 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    711376 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    711377 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    711378 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    711379 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    711380 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    711381 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    711382 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    711383 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    711384 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    711385 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    711386 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    711387 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    711388 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    711389 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    711390 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    711391 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    711392 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    711393 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    711394 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    711395 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    711396 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    711397 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    711398 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    711399 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    711400 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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