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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    711001 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    711002 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    711003 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    711004 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    711005 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    711006 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    711007 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    711008 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    711009 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    711010 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    711011 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    711012 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    711013 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    711014 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    711015 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    711016 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    711017 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    711018 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    711019 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    711020 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    711021 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    711022 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    711023 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    711024 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    711025 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    711026 8xxn:3N (3.6) BS01 rna ? GO:0001732 ... O15371 38641729
    711027 8xxn:C1 (3.6) BS01 rna ? GO:0003723 ... P41567 38641729
    711028 8xxn:CD (3.6) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    711029 8xxn:SA (3.6) BS01 rna ? GO:0000028 ... P08865 38641729
    711030 8xxn:SB (3.6) BS01 rna ? GO:0002181 ... P61247 38641729
    711031 8xxn:SC (3.6) BS01 rna ? GO:0002181 ... P15880 38641729
    711032 8xxn:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    711033 8xxn:SE (3.6) BS01 rna ? GO:0002181 ... P62701 38641729
    711034 8xxn:SF (3.6) BS01 rna ? GO:0000028 ... P46782 38641729
    711035 8xxn:SG (3.6) BS01 rna ? GO:0000082 ... P62753 38641729
    711036 8xxn:SH (3.6) BS01 rna ? GO:0001843 ... P62081 38641729
    711037 8xxn:SI (3.6) BS01 rna ? GO:0000462 ... P62241 38641729
    711038 8xxn:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 38641729
    711039 8xxn:SK (3.6) BS01 rna ? GO:0002181 ... P46783 38641729
    711040 8xxn:SL (3.6) BS01 rna ? GO:0002181 ... P62280 38641729
    711041 8xxn:SM (3.6) BS01 rna ? GO:0002181 ... P25398 38641729
    711042 8xxn:SN (3.6) BS01 rna ? GO:0002181 ... P62277 38641729
    711043 8xxn:SO (3.6) BS01 rna ? GO:0000028 ... P62263 38641729
    711044 8xxn:SP (3.6) BS01 rna ? GO:0000028 ... P62841 38641729
    711045 8xxn:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 38641729
    711046 8xxn:SR (3.6) BS01 rna ? GO:0002181 ... P08708 38641729
    711047 8xxn:SS (3.6) BS01 rna ? GO:0002181 ... P62269 38641729
    711048 8xxn:ST (3.6) BS01 rna ? GO:0000028 ... P39019 38641729
    711049 8xxn:SU (3.6) BS01 rna ? GO:0002181 ... P60866 38641729
    711050 8xxn:SW (3.6) BS01 rna ? GO:0002181 ... P62244 38641729
    711051 8xxn:SX (3.6) BS01 rna ? GO:0002181 ... P62266 38641729
    711052 8xxn:SY (3.6) BS01 rna ? GO:0002181 ... P62847 38641729
    711053 8xxn:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 38641729
    711054 8xxn:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 38641729
    711055 8xxn:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 38641729
    711056 8xxn:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 38641729
    711057 8xxn:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 38641729
    711058 8xxn:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 38641729
    711059 8xxn:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 38641729
    711060 8xxn:Se (3.6) BS01 rna ? GO:0003735 ... P62861 38641729
    711061 8xxn:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 38641729
    711062 8xxn:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 38641729
    711063 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    711064 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    711065 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    711066 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    711067 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    711068 8xz3:C (3.6) BS01 rna N/A GO:0002181 ... A0QSD4 39029461
    711069 8xz3:D (3.6) BS01 rna N/A GO:0003735 ... A0QSD1 39029461
    711070 8xz3:E (3.6) BS01 rna N/A GO:0003735 ... A0QSD2 39029461
    711071 8xz3:F (3.6) BS01 rna N/A GO:0000049 ... A0QSG1 39029461
    711072 8xz3:F (3.6) BS02 rna N/A GO:0000049 ... A0QSG1 39029461
    711073 8xz3:G (3.6) BS01 rna N/A GO:0002181 ... A0QSG4 39029461
    711074 8xz3:H (3.6) BS01 rna N/A GO:0005840 ... A0R7F6 39029461
    711075 8xz3:J (3.6) BS01 rna N/A GO:0003735 ... A0QS45 39029461
    711076 8xz3:K (3.6) BS01 rna N/A GO:0003729 ... A0QSP8 39029461
    711077 8xz3:L (3.6) BS01 rna N/A GO:0003735 ... A0QSF9 39029461
    711078 8xz3:M (3.6) BS01 rna N/A GO:0003735 ... I7G436 39029461
    711079 8xz3:N (3.6) BS01 rna N/A GO:0000049 ... A0QSD8 39029461
    711080 8xz3:P (3.6) BS01 rna N/A GO:0005737 ... I7FGD9 39029461
    711081 8xz3:P (3.6) BS02 rna N/A GO:0005737 ... I7FGD9 39029461
    711082 8xz3:Q (3.6) BS01 rna N/A GO:0003735 ... A0QV42 39029461
    711083 8xz3:R (3.6) BS01 rna N/A GO:0000027 ... A0QYU6 39029461
    711084 8xz3:S (3.6) BS01 rna N/A GO:0003735 ... A0R151 39029461
    711085 8xz3:U (3.6) BS01 rna N/A GO:0000027 ... A0QSD3 39029461
    711086 8xz3:V (3.6) BS01 rna N/A GO:0005840 ... A0QSG0 39029461
    711087 8xz3:X (3.6) BS01 rna N/A GO:0003735 ... A0R150 39029461
    711088 8xz3:Y (3.6) BS01 rna N/A GO:0005840 ... I7FJ52 39029461
    711089 8xz3:a (3.6) BS01 rna N/A GO:0005840 ... A0QSG7 39029461
    711090 8xz3:a (3.6) BS02 rna N/A GO:0005840 ... A0QSG7 39029461
    711091 8xz3:b (3.6) BS01 rna N/A GO:0005840 ... A0R3I9 39029461
    711092 8xz3:d (3.6) BS01 rna N/A GO:0005840 ... A0R7K0 39029461
    711093 8xz3:e (3.6) BS01 rna N/A GO:0003735 ... A0QYU7 39029461
    711094 8xz3:f (3.6) BS01 rna N/A GO:0005737 ... A0QSL4 39029461
    711095 8xzf:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    711096 8xzg:R (3.2) BS01 peptide ? GO:0001525 ... P35414 38428423
    711097 8xzh:R (2.6) BS01 peptide ? GO:0001525 ... P35414 38428423
    711098 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    711099 8xzj:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    711100 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    711101 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    711102 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    711103 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    711104 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    711105 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    711106 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    711107 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    711108 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    711109 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    711110 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    711111 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    711112 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    711113 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    711114 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    711115 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    711116 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    711117 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    711118 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    711119 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    711120 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    711121 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    711122 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    711123 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    711124 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    711125 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    711126 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    711127 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    711128 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    711129 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    711130 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    711131 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    711132 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    711133 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    711134 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    711135 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    711136 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    711137 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    711138 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    711139 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    711140 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    711141 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    711142 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    711143 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    711144 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    711145 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    711146 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    711147 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    711148 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    711149 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    711150 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    711151 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    711152 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    711153 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    711154 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    711155 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    711156 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    711157 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    711158 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    711159 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    711160 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    711161 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    711162 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    711163 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    711164 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    711165 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    711166 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    711167 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    711168 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    711169 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    711170 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    711171 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    711172 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    711173 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    711174 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    711175 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    711176 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    711177 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    711178 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    711179 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    711180 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    711181 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    711182 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    711183 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    711184 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    711185 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    711186 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    711187 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    711188 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    711189 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    711190 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    711191 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    711192 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    711193 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    711194 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    711195 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    711196 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    711197 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    711198 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    711199 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    711200 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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