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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    710801 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    710802 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    710803 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    710804 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    710805 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    710806 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    710807 8xt3:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    710808 8xt3:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    710809 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    710810 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    710811 8xt3:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    710812 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    710813 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    710814 8xt3:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    710815 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    710816 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    710817 8xt3:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    710818 8xt3:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    710819 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    710820 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    710821 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    710822 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    710823 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    710824 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    710825 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    710826 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    710827 8xt3:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    710828 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    710829 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    710830 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    710831 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    710832 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    710833 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    710834 8xuq:A (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710835 8xuq:A (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710836 8xuq:E (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710837 8xuq:E (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710838 8xuq:F (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710839 8xuq:F (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710840 8xuq:G (3.17) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710841 8xuq:G (3.17) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710842 8xus:B (3.18) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    710843 8xuu:A (3.69) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    710844 8xuv:A (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710845 8xuv:A (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710846 8xuv:B (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710847 8xuv:B (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710848 8xuv:C (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710849 8xuv:C (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710850 8xuv:D (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710851 8xuv:D (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710852 8xuv:E (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710853 8xuv:E (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710854 8xuv:F (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710855 8xuv:F (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710856 8xuv:G (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710857 8xuv:G (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710858 8xuv:H (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710859 8xuv:H (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710860 8xuv:I (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710861 8xuv:I (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710862 8xuv:J (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710863 8xuv:J (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710864 8xuv:K (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710865 8xuv:K (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710866 8xuv:L (3.6) BS01 IHP ? GO:0006952 ... A0A3Q7IF17 38866053
    710867 8xuv:L (3.6) BS02 ADP ? GO:0006952 ... A0A3Q7IF17 38866053
    710868 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    710869 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    710870 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    710871 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710872 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710873 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710874 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710875 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710876 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710877 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710878 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    710879 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710880 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710881 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    710882 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710883 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710884 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710885 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710886 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    710887 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    710888 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    710889 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710890 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710891 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    710892 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710893 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710894 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    710895 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    710896 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    710897 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    710898 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    710899 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    710900 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    710901 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    710902 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    710903 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    710904 8xw6:A (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710905 8xw6:A (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710906 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    710907 8xw6:A (1.99) BS04 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710908 8xw6:B (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710909 8xw6:B (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710910 8xw6:B (1.99) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710911 8xw7:A (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710912 8xw7:A (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710913 8xw7:A (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710914 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    710915 8xw7:B (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710916 8xw7:B (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710917 8xw7:B (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710918 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    710919 8xw8:A (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710920 8xw8:A (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710921 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    710922 8xw8:A (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710923 8xw8:B (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710924 8xw8:B (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710925 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    710926 8xw8:B (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710927 8xw8:C (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710928 8xw8:C (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710929 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    710930 8xw8:C (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710931 8xw8:D (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710932 8xw8:D (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710933 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    710934 8xw8:D (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710935 8xw9:A (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710936 8xw9:A (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710937 8xw9:A (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710938 8xw9:A (1.75) BS04 UDP N/A GO:0004743 ... Q8DQ84 39009072
    710939 8xw9:B (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    710940 8xw9:B (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    710941 8xw9:B (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    710942 8xx9:A (1.55) BS01 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710943 8xx9:A (1.55) BS02 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710944 8xxa:A (1.55) BS01 BGC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710945 8xxa:A (1.55) BS02 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710946 8xxa:A (1.55) BS03 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710947 8xxa:A (1.55) BS04 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710948 8xxa:A (1.55) BS05 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710949 8xxa:A (1.55) BS06 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710950 8xxa:A (1.55) BS07 GLC 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710951 8xxa:A (1.55) BS08 MN 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710952 8xxa:A (1.55) BS09 CA 3.2.1.1 GO:0005975 ... D0MDJ8 38641972
    710953 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    710954 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    710955 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    710956 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    710957 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    710958 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    710959 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    710960 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    710961 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    710962 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    710963 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    710964 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    710965 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    710966 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    710967 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    710968 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    710969 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    710970 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    710971 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    710972 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    710973 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    710974 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    710975 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    710976 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    710977 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    710978 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    710979 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    710980 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    710981 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    710982 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    710983 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    710984 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    710985 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    710986 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    710987 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    710988 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    710989 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    710990 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    710991 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    710992 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    710993 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    710994 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    710995 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    710996 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    710997 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    710998 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    710999 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    711000 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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