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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    710601 8xt0:LK (3.2) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    710602 8xt0:LM (3.2) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    710603 8xt0:LN (3.2) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    710604 8xt0:LO (3.2) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    710605 8xt0:LP (3.2) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    710606 8xt0:LQ (3.2) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    710607 8xt0:LS (3.2) BS01 rna N/A GO:0003735 ... P49406 38942792
    710608 8xt0:LT (3.2) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    710609 8xt0:LU (3.2) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    710610 8xt0:LW (3.2) BS01 rna N/A GO:0001650 ... Q16540 38942792
    710611 8xt0:LX (3.2) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    710612 8xt0:La (3.2) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    710613 8xt0:Lb (3.2) BS01 rna N/A GO:0003723 ... Q13084 38942792
    710614 8xt0:Ld (3.2) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    710615 8xt0:Lf (3.2) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    710616 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    710617 8xt0:Lg (3.2) BS01 rna N/A GO:0005739 ... O75394 38942792
    710618 8xt0:Lh (3.2) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    710619 8xt0:Li (3.2) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    710620 8xt0:Lj (3.2) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    710621 8xt0:Lj (3.2) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    710622 8xt0:Lk (3.2) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    710623 8xt0:Ll (3.2) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    710624 8xt0:Ll (3.2) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    710625 8xt0:Ln (3.2) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    710626 8xt0:Lo (3.2) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    710627 8xt0:Lp (3.2) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    710628 8xt0:Lq (3.2) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    710629 8xt0:Lr (3.2) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    710630 8xt0:Lu (3.2) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    710631 8xt0:Lv (3.2) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    710632 8xt0:Lv (3.2) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    710633 8xt0:Lw (3.2) BS01 rna N/A GO:0003735 ... Q13405 38942792
    710634 8xt0:Ly (3.2) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    710635 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    710636 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    710637 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    710638 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    710639 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    710640 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    710641 8xt0:SJ (3.2) BS01 rna N/A GO:0003674 ... P82664 38942792
    710642 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    710643 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    710644 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    710645 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    710646 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    710647 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    710648 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    710649 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    710650 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    710651 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    710652 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    710653 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    710654 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    710655 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    710656 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    710657 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    710658 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    710659 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    710660 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    710661 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    710662 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    710663 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    710664 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    710665 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    710666 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    710667 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    710668 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    710669 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    710670 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    710671 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    710672 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    710673 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    710674 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    710675 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    710676 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    710677 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    710678 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    710679 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    710680 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    710681 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    710682 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    710683 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    710684 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    710685 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    710686 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    710687 8xt1:LX (3.1) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    710688 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    710689 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    710690 8xt1:Ld (3.1) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    710691 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    710692 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    710693 8xt1:Lg (3.1) BS01 rna N/A GO:0005739 ... O75394 38942792
    710694 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    710695 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    710696 8xt1:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    710697 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    710698 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    710699 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    710700 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    710701 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    710702 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    710703 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    710704 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    710705 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    710706 8xt1:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    710707 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    710708 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    710709 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    710710 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    710711 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    710712 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    710713 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    710714 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    710715 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    710716 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    710717 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    710718 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    710719 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    710720 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    710721 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    710722 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    710723 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    710724 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    710725 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    710726 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    710727 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    710728 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    710729 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    710730 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    710731 8xt2:LW (3.3) BS01 rna N/A GO:0001650 ... Q16540 38942792
    710732 8xt2:LX (3.3) BS01 rna N/A GO:0005739 ... Q96A35 38942792
    710733 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    710734 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    710735 8xt2:Ld (3.3) BS01 rna N/A GO:0005739 ... Q8TCC3 38942792
    710736 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    710737 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    710738 8xt2:Lg (3.3) BS01 rna N/A GO:0005739 ... O75394 38942792
    710739 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    710740 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    710741 8xt2:Lj (3.3) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    710742 8xt2:Lj (3.3) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    710743 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    710744 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    710745 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    710746 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    710747 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    710748 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    710749 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    710750 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    710751 8xt2:Lu (3.3) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    710752 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    710753 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    710754 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    710755 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    710756 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    710757 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    710758 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    710759 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    710760 8xt2:SG (3.3) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    710761 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    710762 8xt2:SJ (3.3) BS01 rna N/A GO:0003674 ... P82664 38942792
    710763 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    710764 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    710765 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    710766 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    710767 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    710768 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    710769 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    710770 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    710771 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    710772 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    710773 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    710774 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    710775 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    710776 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    710777 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    710778 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    710779 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    710780 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    710781 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    710782 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    710783 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    710784 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    710785 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    710786 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    710787 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    710788 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    710789 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    710790 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    710791 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    710792 8xt3:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    710793 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    710794 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    710795 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    710796 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    710797 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    710798 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    710799 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    710800 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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