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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    710401 8xsy:LT (3.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    710402 8xsy:LT (3.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    710403 8xsy:LU (3.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    710404 8xsy:LV (3.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    710405 8xsy:LW (3.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    710406 8xsy:LW (3.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    710407 8xsy:LX (3.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    710408 8xsy:LX (3.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    710409 8xsy:LY (3.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    710410 8xsy:LY (3.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    710411 8xsy:LZ (3.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    710412 8xsy:La (3.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    710413 8xsy:Lb (3.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    710414 8xsy:Lc (3.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    710415 8xsy:Lc (3.0) BS02 peptide N/A GO:0002181 ... P62888 38942792
    710416 8xsy:Ld (3.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    710417 8xsy:Le (3.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    710418 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    710419 8xsy:Lf (3.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    710420 8xsy:Lg (3.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    710421 8xsy:Lg (3.0) BS02 peptide N/A GO:0002181 ... P49207 38942792
    710422 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    710423 8xsy:Lg (3.0) BS04 ZN N/A GO:0002181 ... P49207 38942792
    710424 8xsy:Lh (3.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    710425 8xsy:Lh (3.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    710426 8xsy:Li (3.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    710427 8xsy:Lj (3.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    710428 8xsy:Lj (3.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    710429 8xsy:Lj (3.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    710430 8xsy:Lk (3.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    710431 8xsy:Ll (3.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    710432 8xsy:Ll (3.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    710433 8xsy:Lm (3.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    710434 8xsy:Lm (3.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    710435 8xsy:Lo (3.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    710436 8xsy:Lo (3.0) BS02 rna N/A GO:0002181 ... P83881 38942792
    710437 8xsy:Lo (3.0) BS03 ZN N/A GO:0002181 ... P83881 38942792
    710438 8xsy:Lp (3.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    710439 8xsy:Lp (3.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    710440 8xsy:Lr (3.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    710441 8xsy:Ls (3.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    710442 8xsy:Lt (3.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    710443 8xsy:SA (3.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    710444 8xsy:SB (3.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    710445 8xsy:SB (3.0) BS02 rna N/A GO:0002181 ... P61247 38942792
    710446 8xsy:SC (3.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    710447 8xsy:SD (3.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    710448 8xsy:SE (3.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    710449 8xsy:SF (3.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    710450 8xsy:SG (3.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    710451 8xsy:SH (3.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    710452 8xsy:SI (3.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    710453 8xsy:SI (3.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    710454 8xsy:SJ (3.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    710455 8xsy:SK (3.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    710456 8xsy:SL (3.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    710457 8xsy:SM (3.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    710458 8xsy:SM (3.0) BS02 ZN N/A GO:0002181 ... P25398 38942792
    710459 8xsy:SN (3.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    710460 8xsy:SO (3.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    710461 8xsy:SP (3.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    710462 8xsy:SQ (3.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    710463 8xsy:SR (3.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    710464 8xsy:SS (3.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    710465 8xsy:ST (3.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    710466 8xsy:SU (3.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    710467 8xsy:SW (3.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    710468 8xsy:SX (3.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    710469 8xsy:SY (3.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    710470 8xsy:SZ (3.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    710471 8xsy:Sa (3.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    710472 8xsy:Sa (3.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    710473 8xsy:Sb (3.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    710474 8xsy:Sc (3.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    710475 8xsy:Sd (3.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    710476 8xsy:Sf (3.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    710477 8xsy:Sg (3.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    710478 8xsz:CA (3.2) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    710479 8xsz:LA (3.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    710480 8xsz:LA (3.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    710481 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    710482 8xsz:LB (3.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    710483 8xsz:LC (3.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    710484 8xsz:LC (3.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    710485 8xsz:LD (3.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    710486 8xsz:LD (3.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    710487 8xsz:LE (3.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    710488 8xsz:LF (3.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    710489 8xsz:LF (3.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    710490 8xsz:LG (3.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    710491 8xsz:LG (3.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    710492 8xsz:LH (3.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    710493 8xsz:LI (3.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    710494 8xsz:LI (3.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    710495 8xsz:LI (3.2) BS03 rna N/A GO:0000027 ... P27635 38942792
    710496 8xsz:LJ (3.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    710497 8xsz:LJ (3.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    710498 8xsz:LL (3.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    710499 8xsz:LL (3.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    710500 8xsz:LM (3.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    710501 8xsz:LN (3.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    710502 8xsz:LN (3.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    710503 8xsz:LO (3.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    710504 8xsz:LP (3.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    710505 8xsz:LP (3.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    710506 8xsz:LQ (3.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    710507 8xsz:LR (3.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    710508 8xsz:LS (3.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    710509 8xsz:LS (3.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    710510 8xsz:LT (3.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    710511 8xsz:LT (3.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    710512 8xsz:LU (3.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    710513 8xsz:LV (3.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    710514 8xsz:LV (3.2) BS02 rna N/A GO:0000122 ... P62829 38942792
    710515 8xsz:LW (3.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    710516 8xsz:LW (3.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    710517 8xsz:LX (3.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    710518 8xsz:LX (3.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    710519 8xsz:LY (3.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    710520 8xsz:LY (3.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    710521 8xsz:LZ (3.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    710522 8xsz:La (3.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    710523 8xsz:Lb (3.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    710524 8xsz:Lc (3.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    710525 8xsz:Lc (3.2) BS02 rna N/A GO:0002181 ... P62888 38942792
    710526 8xsz:Lc (3.2) BS03 peptide N/A GO:0002181 ... P62888 38942792
    710527 8xsz:Ld (3.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    710528 8xsz:Le (3.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    710529 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    710530 8xsz:Lf (3.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    710531 8xsz:Lg (3.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    710532 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    710533 8xsz:Lg (3.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    710534 8xsz:Lh (3.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    710535 8xsz:Lh (3.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    710536 8xsz:Li (3.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    710537 8xsz:Lj (3.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    710538 8xsz:Lj (3.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    710539 8xsz:Lj (3.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    710540 8xsz:Lk (3.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    710541 8xsz:Ll (3.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    710542 8xsz:Ll (3.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    710543 8xsz:Lm (3.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    710544 8xsz:Lm (3.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    710545 8xsz:Lo (3.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    710546 8xsz:Lo (3.2) BS02 rna N/A GO:0002181 ... P83881 38942792
    710547 8xsz:Lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 38942792
    710548 8xsz:Lp (3.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    710549 8xsz:Lp (3.2) BS02 rna N/A GO:0002181 ... P61513 38942792
    710550 8xsz:Lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 38942792
    710551 8xsz:Lr (3.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    710552 8xsz:Ls (3.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    710553 8xsz:Lt (3.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    710554 8xsz:SA (3.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    710555 8xsz:SB (3.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    710556 8xsz:SB (3.2) BS02 rna N/A GO:0002181 ... P61247 38942792
    710557 8xsz:SC (3.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    710558 8xsz:SD (3.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    710559 8xsz:SE (3.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    710560 8xsz:SF (3.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    710561 8xsz:SG (3.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    710562 8xsz:SH (3.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    710563 8xsz:SI (3.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    710564 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    710565 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    710566 8xsz:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    710567 8xsz:SK (3.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    710568 8xsz:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    710569 8xsz:SM (3.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    710570 8xsz:SM (3.2) BS02 ZN N/A GO:0002181 ... P25398 38942792
    710571 8xsz:SN (3.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    710572 8xsz:SN (3.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    710573 8xsz:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    710574 8xsz:SP (3.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    710575 8xsz:SP (3.2) BS02 rna N/A GO:0000028 ... P62841 38942792
    710576 8xsz:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    710577 8xsz:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    710578 8xsz:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    710579 8xsz:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    710580 8xsz:SU (3.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    710581 8xsz:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    710582 8xsz:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    710583 8xsz:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    710584 8xsz:SZ (3.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    710585 8xsz:Sa (3.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    710586 8xsz:Sb (3.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    710587 8xsz:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    710588 8xsz:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    710589 8xsz:Sf (3.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    710590 8xsz:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    710591 8xt0:L3 (3.2) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    710592 8xt0:L4 (3.2) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    710593 8xt0:L6 (3.2) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    710594 8xt0:L8 (3.2) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    710595 8xt0:LB (3.2) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    710596 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    710597 8xt0:LC (3.2) BS01 rna N/A GO:0003723 ... P09001 38942792
    710598 8xt0:LD (3.2) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    710599 8xt0:LI (3.2) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    710600 8xt0:LJ (3.2) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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