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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    710201 8xr6:d (2.53) BS08 CLA N/A GO:0005506 ... A0A222AI37 N/A
    710202 8xr6:d (2.53) BS09 PHO N/A GO:0005506 ... A0A222AI37 N/A
    710203 8xr6:d (2.53) BS10 CLA N/A GO:0005506 ... A0A222AI37 N/A
    710204 8xr6:d (2.53) BS11 CLA N/A GO:0005506 ... A0A222AI37 N/A
    710205 8xr6:d (2.53) BS12 8CT N/A GO:0005506 ... A0A222AI37 N/A
    710206 8xr6:e (2.53) BS01 peptide N/A GO:0005506 ... A0A222AI74 N/A
    710207 8xr6:e (2.53) BS02 HEM N/A GO:0005506 ... A0A222AI74 N/A
    710208 8xr6:h (2.53) BS01 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    710209 8xr6:h (2.53) BS02 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    710210 8xr6:h (2.53) BS03 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    710211 8xr6:h (2.53) BS04 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    710212 8xr6:h (2.53) BS05 CLA N/A GO:0009523 ... A0A222AIE4 N/A
    710213 8xr6:h (2.53) BS06 8CT N/A GO:0009523 ... A0A222AIE4 N/A
    710214 8xr6:i (2.53) BS01 CLA N/A GO:0005737 ... A0A222AI80 N/A
    710215 8xr6:i (2.53) BS02 CLA N/A GO:0005737 ... A0A222AI80 N/A
    710216 8xr6:j (2.53) BS01 peptide N/A GO:0009523 ... A0A222AI54 N/A
    710217 8xr6:k (2.53) BS01 CLA N/A GO:0005737 ... A0A222AIA0 N/A
    710218 8xr6:k (2.53) BS02 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    710219 8xr6:k (2.53) BS03 8CT N/A GO:0005737 ... A0A222AIA0 N/A
    710220 8xr6:x (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI61 N/A
    710221 8xr6:y (2.53) BS01 8CT N/A GO:0009523 ... A0A222AI69 N/A
    710222 8xr6:z (2.53) BS01 CLA N/A GO:0009523 ... A0A222AI96 N/A
    710223 8xrt:A (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710224 8xrt:B (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710225 8xrt:C (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710226 8xrt:D (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710227 8xrt:E (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710228 8xrt:F (2.4) BS01 CA N/A GO:0004553 ... N/A 38527679
    710229 8xru:A (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    710230 8xru:B (2.02) BS01 CA N/A GO:0004553 ... N/A 38527679
    710231 8xrv:A (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710232 8xrv:A (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710233 8xrv:B (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710234 8xrv:B (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710235 8xrv:C (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710236 8xrv:C (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710237 8xrv:D (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710238 8xrv:D (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710239 8xrv:E (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710240 8xrv:E (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710241 8xrv:F (2.4) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710242 8xrv:F (2.4) BS02 CA N/A GO:0004553 ... N/A 38527679
    710243 8xrx:A (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710244 8xrx:A (2.5) BS02 BGC N/A GO:0004553 ... N/A 38527679
    710245 8xrx:A (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    710246 8xrx:B (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710247 8xrx:B (2.5) BS02 GLC N/A GO:0004553 ... N/A 38527679
    710248 8xrx:B (2.5) BS03 CA N/A GO:0004553 ... N/A 38527679
    710249 8xrx:C (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710250 8xrx:C (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    710251 8xrx:D (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710252 8xrx:D (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    710253 8xrx:E (2.5) BS01 CA N/A GO:0004553 ... N/A 38527679
    710254 8xrx:F (2.5) BS01 BGC N/A GO:0004553 ... N/A 38527679
    710255 8xrx:F (2.5) BS02 CA N/A GO:0004553 ... N/A 38527679
    710256 8xsx:CA (2.4) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    710257 8xsx:CB (2.4) BS01 rna N/A GO:0002244 ... P13639 38942792
    710258 8xsx:CB (2.4) BS02 rna N/A GO:0002244 ... P13639 38942792
    710259 8xsx:CB (2.4) BS03 ADP N/A GO:0002244 ... P13639 38942792
    710260 8xsx:CD (2.4) BS01 rna N/A GO:0003723 ... Q8NC51 38942792
    710261 8xsx:LA (2.4) BS01 rna N/A GO:0002181 ... P62917 38942792
    710262 8xsx:LA (2.4) BS02 rna N/A GO:0002181 ... P62917 38942792
    710263 8xsx:LA (2.4) BS03 MG N/A GO:0002181 ... P62917 38942792
    710264 8xsx:LB (2.4) BS01 rna N/A GO:0002181 ... P39023 38942792
    710265 8xsx:LC (2.4) BS01 rna N/A GO:0002181 ... P36578 38942792
    710266 8xsx:LC (2.4) BS02 rna N/A GO:0002181 ... P36578 38942792
    710267 8xsx:LD (2.4) BS01 rna N/A GO:0000027 ... P46777 38942792
    710268 8xsx:LD (2.4) BS02 rna N/A GO:0000027 ... P46777 38942792
    710269 8xsx:LE (2.4) BS01 rna N/A GO:0000027 ... Q02878 38942792
    710270 8xsx:LF (2.4) BS01 rna N/A GO:0000463 ... P18124 38942792
    710271 8xsx:LF (2.4) BS02 rna N/A GO:0000463 ... P18124 38942792
    710272 8xsx:LG (2.4) BS01 rna N/A GO:0000470 ... P62424 38942792
    710273 8xsx:LG (2.4) BS02 rna N/A GO:0000470 ... P62424 38942792
    710274 8xsx:LH (2.4) BS01 rna N/A GO:0002181 ... P32969 38942792
    710275 8xsx:LI (2.4) BS01 rna N/A GO:0000027 ... Q96L21 38942792
    710276 8xsx:LI (2.4) BS02 rna N/A GO:0000027 ... Q96L21 38942792
    710277 8xsx:LJ (2.4) BS01 rna N/A GO:0000027 ... P62913 38942792
    710278 8xsx:LJ (2.4) BS02 rna N/A GO:0000027 ... P62913 38942792
    710279 8xsx:LK (2.4) BS01 rna N/A GO:0002181 ... P30050 38942792
    710280 8xsx:LL (2.4) BS01 rna N/A GO:0001824 ... P26373 38942792
    710281 8xsx:LL (2.4) BS02 rna N/A GO:0001824 ... P26373 38942792
    710282 8xsx:LM (2.4) BS01 rna N/A GO:0002181 ... P50914 38942792
    710283 8xsx:LN (2.4) BS01 rna N/A GO:0002181 ... P61313 38942792
    710284 8xsx:LN (2.4) BS02 rna N/A GO:0002181 ... P61313 38942792
    710285 8xsx:LO (2.4) BS01 rna N/A GO:0002181 ... P40429 38942792
    710286 8xsx:LP (2.4) BS01 rna N/A GO:0002181 ... P18621 38942792
    710287 8xsx:LP (2.4) BS02 rna N/A GO:0002181 ... P18621 38942792
    710288 8xsx:LQ (2.4) BS01 rna N/A GO:0002181 ... Q07020 38942792
    710289 8xsx:LR (2.4) BS01 rna N/A GO:0002181 ... P84098 38942792
    710290 8xsx:LR (2.4) BS02 rna N/A GO:0002181 ... P84098 38942792
    710291 8xsx:LS (2.4) BS01 rna N/A GO:0002181 ... Q02543 38942792
    710292 8xsx:LS (2.4) BS02 rna N/A GO:0002181 ... Q02543 38942792
    710293 8xsx:LT (2.4) BS01 rna N/A GO:0002181 ... P46778 38942792
    710294 8xsx:LT (2.4) BS02 rna N/A GO:0002181 ... P46778 38942792
    710295 8xsx:LU (2.4) BS01 rna N/A GO:0002181 ... P35268 38942792
    710296 8xsx:LV (2.4) BS01 rna N/A GO:0000122 ... P62829 38942792
    710297 8xsx:LW (2.4) BS01 rna N/A GO:0000027 ... P83731 38942792
    710298 8xsx:LW (2.4) BS02 rna N/A GO:0000027 ... P83731 38942792
    710299 8xsx:LX (2.4) BS01 rna N/A GO:0000027 ... P62750 38942792
    710300 8xsx:LX (2.4) BS02 rna N/A GO:0000027 ... P62750 38942792
    710301 8xsx:LY (2.4) BS01 rna N/A GO:0002181 ... P61254 38942792
    710302 8xsx:LY (2.4) BS02 rna N/A GO:0002181 ... P61254 38942792
    710303 8xsx:LZ (2.4) BS01 rna N/A GO:0002181 ... P61353 38942792
    710304 8xsx:La (2.4) BS01 rna N/A GO:0002181 ... P46776 38942792
    710305 8xsx:Lb (2.4) BS01 rna N/A GO:0002181 ... P47914 38942792
    710306 8xsx:Lc (2.4) BS01 rna N/A GO:0002181 ... P62888 38942792
    710307 8xsx:Lc (2.4) BS02 rna N/A GO:0002181 ... P62888 38942792
    710308 8xsx:Ld (2.4) BS01 rna N/A GO:0002181 ... P62899 38942792
    710309 8xsx:Le (2.4) BS01 rna N/A GO:0002181 ... P62910 38942792
    710310 8xsx:Le (2.4) BS02 MG N/A GO:0002181 ... P62910 38942792
    710311 8xsx:Lf (2.4) BS01 rna N/A GO:0000049 ... P18077 38942792
    710312 8xsx:Lg (2.4) BS01 rna N/A GO:0002181 ... P49207 38942792
    710313 8xsx:Lg (2.4) BS02 MG N/A GO:0002181 ... P49207 38942792
    710314 8xsx:Lg (2.4) BS03 ZN N/A GO:0002181 ... P49207 38942792
    710315 8xsx:Lh (2.4) BS01 rna N/A GO:0000463 ... P42766 38942792
    710316 8xsx:Lh (2.4) BS02 rna N/A GO:0000463 ... P42766 38942792
    710317 8xsx:Li (2.4) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    710318 8xsx:Lj (2.4) BS01 rna N/A GO:0002181 ... P61927 38942792
    710319 8xsx:Lj (2.4) BS02 rna N/A GO:0002181 ... P61927 38942792
    710320 8xsx:Lj (2.4) BS03 ZN N/A GO:0002181 ... P61927 38942792
    710321 8xsx:Lk (2.4) BS01 rna N/A GO:0001501 ... P63173 38942792
    710322 8xsx:Ll (2.4) BS01 rna N/A GO:0002181 ... P62891 38942792
    710323 8xsx:Ll (2.4) BS02 rna N/A GO:0002181 ... P62891 38942792
    710324 8xsx:Lm (2.4) BS01 rna N/A GO:0002181 ... P62987 38942792
    710325 8xsx:Lm (2.4) BS02 ZN N/A GO:0002181 ... P62987 38942792
    710326 8xsx:Lo (2.4) BS01 rna N/A GO:0002181 ... P83881 38942792
    710327 8xsx:Lo (2.4) BS02 rna N/A GO:0002181 ... P83881 38942792
    710328 8xsx:Lo (2.4) BS03 ZN N/A GO:0002181 ... P83881 38942792
    710329 8xsx:Lp (2.4) BS01 rna N/A GO:0002181 ... P61513 38942792
    710330 8xsx:Lp (2.4) BS02 ZN N/A GO:0002181 ... P61513 38942792
    710331 8xsx:Lr (2.4) BS01 rna N/A GO:0002181 ... P46779 38942792
    710332 8xsx:Ls (2.4) BS01 rna N/A GO:0000027 ... P05388 38942792
    710333 8xsx:Lz (2.4) BS01 rna N/A GO:0002181 ... P62906 38942792
    710334 8xsx:SA (2.4) BS01 rna N/A GO:0000028 ... P08865 38942792
    710335 8xsx:SB (2.4) BS01 rna N/A GO:0002181 ... P61247 38942792
    710336 8xsx:SC (2.4) BS01 rna N/A GO:0002181 ... P15880 38942792
    710337 8xsx:SD (2.4) BS01 rna N/A GO:0000977 ... P23396 38942792
    710338 8xsx:SE (2.4) BS01 rna N/A GO:0002181 ... P62701 38942792
    710339 8xsx:SF (2.4) BS01 rna N/A GO:0000028 ... P46782 38942792
    710340 8xsx:SG (2.4) BS01 rna N/A GO:0000082 ... P62753 38942792
    710341 8xsx:SH (2.4) BS01 rna N/A GO:0001843 ... P62081 38942792
    710342 8xsx:SI (2.4) BS01 rna N/A GO:0000462 ... P62241 38942792
    710343 8xsx:SI (2.4) BS02 rna N/A GO:0000462 ... P62241 38942792
    710344 8xsx:SJ (2.4) BS01 rna N/A GO:0002181 ... P46781 38942792
    710345 8xsx:SK (2.4) BS01 rna N/A GO:0002181 ... P46783 38942792
    710346 8xsx:SL (2.4) BS01 rna N/A GO:0002181 ... P62280 38942792
    710347 8xsx:SM (2.4) BS01 rna N/A GO:0002181 ... P25398 38942792
    710348 8xsx:SN (2.4) BS01 rna N/A GO:0002181 ... P62277 38942792
    710349 8xsx:SN (2.4) BS02 rna N/A GO:0002181 ... P62277 38942792
    710350 8xsx:SO (2.4) BS01 rna N/A GO:0000028 ... P62263 38942792
    710351 8xsx:SP (2.4) BS01 rna N/A GO:0000028 ... P62841 38942792
    710352 8xsx:SQ (2.4) BS01 rna N/A GO:0000462 ... P62249 38942792
    710353 8xsx:SR (2.4) BS01 rna N/A GO:0002181 ... P08708 38942792
    710354 8xsx:SS (2.4) BS01 rna N/A GO:0002181 ... P62269 38942792
    710355 8xsx:ST (2.4) BS01 rna N/A GO:0000028 ... P39019 38942792
    710356 8xsx:SU (2.4) BS01 rna N/A GO:0002181 ... P60866 38942792
    710357 8xsx:SW (2.4) BS01 rna N/A GO:0002181 ... P62244 38942792
    710358 8xsx:SX (2.4) BS01 rna N/A GO:0002181 ... P62266 38942792
    710359 8xsx:SY (2.4) BS01 rna N/A GO:0002181 ... P62847 38942792
    710360 8xsx:SZ (2.4) BS01 rna N/A GO:0002181 ... P62851 38942792
    710361 8xsx:Sa (2.4) BS01 rna N/A GO:0002181 ... P62854 38942792
    710362 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    710363 8xsx:Sb (2.4) BS01 rna N/A GO:0000028 ... P42677 38942792
    710364 8xsx:Sc (2.4) BS01 rna N/A GO:0000028 ... P62857 38942792
    710365 8xsx:Sd (2.4) BS01 rna N/A GO:0002181 ... P62273 38942792
    710366 8xsx:Sf (2.4) BS01 rna N/A GO:0002181 ... P62979 38942792
    710367 8xsx:Sg (2.4) BS01 rna N/A GO:0001891 ... P63244 38942792
    710368 8xsy:CA (3.0) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    710369 8xsy:CE (3.0) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    710370 8xsy:LA (3.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    710371 8xsy:LA (3.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    710372 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    710373 8xsy:LB (3.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    710374 8xsy:LC (3.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    710375 8xsy:LC (3.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    710376 8xsy:LD (3.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    710377 8xsy:LD (3.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    710378 8xsy:LE (3.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    710379 8xsy:LF (3.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    710380 8xsy:LF (3.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    710381 8xsy:LG (3.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    710382 8xsy:LG (3.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    710383 8xsy:LH (3.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    710384 8xsy:LI (3.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    710385 8xsy:LI (3.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    710386 8xsy:LJ (3.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    710387 8xsy:LJ (3.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    710388 8xsy:LL (3.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    710389 8xsy:LL (3.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    710390 8xsy:LM (3.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    710391 8xsy:LN (3.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    710392 8xsy:LN (3.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    710393 8xsy:LO (3.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    710394 8xsy:LP (3.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    710395 8xsy:LP (3.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    710396 8xsy:LQ (3.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    710397 8xsy:LR (3.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    710398 8xsy:LR (3.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    710399 8xsy:LS (3.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    710400 8xsy:LS (3.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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