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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    709401 8x83:A (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709402 8x83:B (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709403 8x83:C (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709404 8x83:D (2.8) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709405 8x84:A (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709406 8x84:B (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709407 8x84:C (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709408 8x84:D (3.1) BS01 FRU ? GO:0001582 ... Q9V4K2 38305684
    709409 8x8l:R (2.7) BS01 peptide ? GO:0004930 ... P35346 N/A
    709410 8x8n:R (2.9) BS01 peptide ? GO:0004930 ... P35346 N/A
    709411 8x8q:F (3.14) BS01 ZN ? GO:0005737 ... R9YK28 38755176
    709412 8x90:A (2.95) BS01 PS1 ? GO:0001540 ... O00555 38443561
    709413 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    709414 8x90:A (2.95) BS03 PT5 ? GO:0001540 ... O00555 38443561
    709415 8x90:A (2.95) BS04 CA ? GO:0001540 ... O00555 38443561
    709416 8x90:A (2.95) BS05 Y01 ? GO:0001540 ... O00555 38443561
    709417 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    709418 8x90:A (2.95) BS07 Y01 ? GO:0001540 ... O00555 38443561
    709419 8x90:A (2.95) BS08 Y01 ? GO:0001540 ... O00555 38443561
    709420 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    709421 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    709422 8x91:A (3.11) BS01 peptide ? GO:0001540 ... O00555 38443561
    709423 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    709424 8x91:A (3.11) BS03 PT5 ? GO:0001540 ... O00555 38443561
    709425 8x91:A (3.11) BS04 CA ? GO:0001540 ... O00555 38443561
    709426 8x91:A (3.11) BS05 Y01 ? GO:0001540 ... O00555 38443561
    709427 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    709428 8x91:A (3.11) BS07 Y01 ? GO:0001540 ... O00555 38443561
    709429 8x91:A (3.11) BS08 Y01 ? GO:0001540 ... O00555 38443561
    709430 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    709431 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    709432 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    709433 8x93:A (2.92) BS02 PT5 ? GO:0001540 ... O00555 38443561
    709434 8x93:A (2.92) BS03 Y01 ? GO:0001540 ... O00555 38443561
    709435 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    709436 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    709437 8x93:A (2.92) BS06 Y01 ? GO:0001540 ... O00555 38443561
    709438 8x93:A (2.92) BS07 Y01 ? GO:0001540 ... O00555 38443561
    709439 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    709440 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    709441 8x93:A (2.92) BS10 CA ? GO:0001540 ... O00555 38443561
    709442 8x9d:A (2.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709443 8x9d:A (2.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709444 8x9d:A (2.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709445 8x9d:A (2.11) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709446 8x9e:A (2.5) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709447 8x9e:A (2.5) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709448 8x9e:A (2.5) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709449 8x9e:A (2.5) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709450 8x9f:A (2.48) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709451 8x9f:A (2.48) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709452 8x9f:A (2.48) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709453 8x9f:A (2.48) BS04 S8I 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709454 8x9g:A (3.11) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709455 8x9g:A (3.11) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709456 8x9g:A (3.11) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709457 8x9g:A (3.11) BS04 S7L 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709458 8x9h:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709459 8x9h:A (2.2) BS02 FES 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709460 8x9h:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709461 8x9h:A (2.2) BS04 FE 1.2.7.4 GO:0003824 ... Q9F8A8 38548760
    709462 8xam:A (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    709463 8xam:A (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    709464 8xam:A (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    709465 8xam:B (1.3) BS01 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    709466 8xam:B (1.3) BS02 XRH 2.5.1.6 GO:0004478 ... P31153 38342078
    709467 8xam:B (1.3) BS03 SAM 2.5.1.6 GO:0004478 ... P31153 38342078
    709468 8xar:A (1.19) BS01 YMW N/A GO:0004478 ... P31153 38818879
    709469 8xar:A (1.19) BS02 SAM N/A GO:0004478 ... P31153 38818879
    709470 8xas:A (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709471 8xas:A (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709472 8xas:B (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709473 8xas:B (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709474 8xas:C (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709475 8xas:C (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709476 8xas:D (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709477 8xas:D (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709478 8xas:E (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709479 8xas:E (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709480 8xas:F (2.346) BS01 dna ? GO:0003677 ... Q940D0 38198526
    709481 8xas:F (2.346) BS02 dna ? GO:0003677 ... Q940D0 38198526
    709482 8xb0:A (1.12) BS01 YN8 N/A GO:0004478 ... P31153 38818879
    709483 8xb0:A (1.12) BS02 SAM N/A GO:0004478 ... P31153 38818879
    709484 8xb2:A (3.04) BS01 YNT N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    709485 8xb3:A (2.8) BS01 YMN N/A GO:0005515 ... P0AEX9
    P23975    		 39143211
    709486 8xbe:A (3.4) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    709487 8xbg:A (3.43) BS01 KW0 ? GO:0004930 ... Q9UPC5 38326347
    709488 8xbh:R (2.83) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    709489 8xbi:R (3.06) BS01 KW3 ? GO:0004930 ... Q9UPC5 38326347
    709490 8xbs:A (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    709491 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    709492 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    709493 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    709494 8xbs:B (2.21) BS01 ZN ? GO:0003723 ... Q9GZC8 38742627
    709495 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    709496 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    709497 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    709498 8xbt:A (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    709499 8xbt:A (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    709500 8xbt:B (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    709501 8xbt:B (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    709502 8xbt:C (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    709503 8xbt:C (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    709504 8xbt:D (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    709505 8xbt:D (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    709506 8xbt:E (4.12) BS01 dna ? GO:0000786 ... P68431 38509361
    709507 8xbt:E (4.12) BS02 dna ? GO:0000786 ... P68431 38509361
    709508 8xbt:F (4.12) BS01 dna ? GO:0000781 ... P62805 38509361
    709509 8xbt:F (4.12) BS02 dna ? GO:0000781 ... P62805 38509361
    709510 8xbt:G (4.12) BS01 dna ? GO:0000786 ... P04908 38509361
    709511 8xbt:G (4.12) BS02 dna ? GO:0000786 ... P04908 38509361
    709512 8xbt:H (4.12) BS01 dna ? GO:0000786 ... P06899 38509361
    709513 8xbt:H (4.12) BS02 dna ? GO:0000786 ... P06899 38509361
    709514 8xbt:O (4.12) BS01 dna ? GO:0000150 ... Q06609 38509361
    709515 8xbu:A (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    709516 8xbu:A (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    709517 8xbu:B (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    709518 8xbu:B (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    709519 8xbu:C (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    709520 8xbu:C (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    709521 8xbu:D (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    709522 8xbu:D (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    709523 8xbu:E (4.24) BS01 dna ? GO:0000786 ... P68431 38509361
    709524 8xbu:E (4.24) BS02 dna ? GO:0000786 ... P68431 38509361
    709525 8xbu:F (4.24) BS01 dna ? GO:0000781 ... P62805 38509361
    709526 8xbu:F (4.24) BS02 dna ? GO:0000781 ... P62805 38509361
    709527 8xbu:G (4.24) BS01 dna ? GO:0000786 ... P04908 38509361
    709528 8xbu:G (4.24) BS02 dna ? GO:0000786 ... P04908 38509361
    709529 8xbu:H (4.24) BS01 dna ? GO:0000786 ... P06899 38509361
    709530 8xbu:H (4.24) BS02 dna ? GO:0000786 ... P06899 38509361
    709531 8xbu:L (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    709532 8xbu:M (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    709533 8xbu:R (4.24) BS01 dna ? GO:0000150 ... Q06609 38509361
    709534 8xbw:E (2.89) BS01 dna ? GO:0000786 ... P68431 38509361
    709535 8xbw:F (2.89) BS01 dna ? GO:0000781 ... P62805 38509361
    709536 8xc1:A (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    709537 8xc1:A (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    709538 8xc1:A (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    709539 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    709540 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    709541 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    709542 8xc1:B (2.21) BS01 rna ? GO:0003723 ... Q9GZC8 38742627
    709543 8xc1:B (2.21) BS02 rna ? GO:0003723 ... Q9GZC8 38742627
    709544 8xc1:B (2.21) BS03 ZN ? GO:0003723 ... Q9GZC8 38742627
    709545 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    709546 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    709547 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    709548 8xc4:B (3.24) BS01 FUC ? GO:0019031 ... Q4VCP5 38773072
    709549 8xcg:L (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    709550 8xcg:N (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    709551 8xcg:f (3.46) BS01 SF4 ? GO:0030430 ... P03738 38760367
    709552 8xcm:A (3.08) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    709553 8xcm:A (3.08) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    709554 8xcn:A (3.02) BS01 FAD 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    709555 8xcn:A (3.02) BS02 F3S 1.1.5.14 GO:0005886 ... M1VMF7 N/A
    709556 8xco:A (2.64) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709557 8xcp:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709558 8xcp:A (2.64) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709559 8xcq:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709560 8xcq:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709561 8xcr:A (2.6) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709562 8xcr:A (2.6) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709563 8xcs:A (2.63) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709564 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    709565 8xct:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709566 8xcu:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709567 8xcu:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709568 8xcv:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709569 8xcw:A (2.87) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709570 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    709571 8xcx:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709572 8xcx:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709573 8xcy:A (2.91) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709574 8xcy:A (2.91) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709575 8xcz:A (2.83) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709576 8xcz:A (2.83) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709577 8xd0:A (2.83) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709578 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    709579 8xd1:A (2.96) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709580 8xd2:A (2.64) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709581 8xd3:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709582 8xd3:A (2.87) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709583 8xd4:A (2.87) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709584 8xd5:A (2.75) BS01 NAP 1.4.1.3 GO:0004352 ... O74024 38750092
    709585 8xd5:A (2.75) BS02 GGL 1.4.1.3 GO:0004352 ... O74024 38750092
    709586 8xd6:A (2.79) BS01 NDP 1.4.1.3 GO:0004352 ... O74024 38750092
    709587 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    709588 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    709589 8xej:X (3.66) BS01 DLP ? GO:0002513 ... Q9H6D3 38364890
    709590 8xfd:A (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    709591 8xfd:A (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    709592 8xfd:A (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    709593 8xfd:B (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    709594 8xfd:B (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    709595 8xfd:B (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    709596 8xfd:C (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    709597 8xfd:C (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    709598 8xfd:C (2.1) BS03 WV2 2.7.1.40 GO:0000287 ... P30613 N/A
    709599 8xfd:D (2.1) BS01 MG 2.7.1.40 GO:0000287 ... P30613 N/A
    709600 8xfd:D (2.1) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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