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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    708801 8wpe:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708802 8wpe:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708803 8wpe:C (2.7) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    708804 8wpf:A (3.0) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708805 8wpf:A (3.0) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708806 8wpf:A (3.0) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708807 8wpf:A (3.0) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708808 8wpf:B (3.0) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    708809 8wpf:C (3.0) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    708810 8wpg:A (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    708811 8wpg:A (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    708812 8wpg:A (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    708813 8wpg:B (2.7) BS01 TRP ? GO:0004930 ... P41180 37919470
    708814 8wpg:B (2.7) BS02 CA ? GO:0004930 ... P41180 37919470
    708815 8wpg:B (2.7) BS03 YP4 ? GO:0004930 ... P41180 37919470
    708816 8wpk:A (2.7) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708817 8wpk:A (2.7) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708818 8wpk:A (2.7) BS03 D3T 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708819 8wpk:A (2.7) BS04 MG 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708820 8wpk:B (2.7) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    708821 8wpk:C (2.7) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    708822 8wpp:A (3.1) BS01 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708823 8wpp:A (3.1) BS02 dna 2.7.7.7 GO:0000166 ... A0A7H0DN44 37995690
    708824 8wpp:B (3.1) BS01 dna ? GO:0006260 ... A0A7H0DNC0 37995690
    708825 8wpp:C (3.1) BS01 dna 3.2.2.27 GO:0003677 ... M1LL92 37995690
    708826 8wpu:A (3.1) BS01 TRP ? GO:0004930 ... P41180 37919470
    708827 8wpu:A (3.1) BS02 CA ? GO:0004930 ... P41180 37919470
    708828 8wpu:A (3.1) BS03 YP4 ? GO:0004930 ... P41180 37919470
    708829 8wpu:B (3.1) BS01 YP4 ? GO:0004930 ... P41180 37919470
    708830 8wpu:B (3.1) BS02 TRP ? GO:0004930 ... P41180 37919470
    708831 8wpu:B (3.1) BS03 CA ? GO:0004930 ... P41180 37919470
    708832 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    708833 8wq2:AS2P (4.1) BS01 rna ? GO:0003735 ... P39478 38599770
    708834 8wq2:AS2P (4.1) BS02 UNK ? GO:0003735 ... P39478 38599770
    708835 8wq2:AS2P (4.1) BS03 UNK ? GO:0003735 ... P39478 38599770
    708836 8wq2:AS2P (4.1) BS04 UNK ? GO:0003735 ... P39478 38599770
    708837 8wq2:AS3P (4.1) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    708838 8wq2:AS4E (4.1) BS01 rna ? GO:0003723 ... O05634 38599770
    708839 8wq2:AS4P (4.1) BS01 rna ? GO:0003723 ... P39467 38599770
    708840 8wq2:AS5P (4.1) BS01 rna ? GO:0003723 ... O05641 38599770
    708841 8wq2:AS5P (4.1) BS02 UNK ? GO:0003723 ... O05641 38599770
    708842 8wq2:AS5P (4.1) BS03 UNK ? GO:0003723 ... O05641 38599770
    708843 8wq2:AS6E (4.1) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    708844 8wq2:AS7P (4.1) BS01 rna ? GO:0000028 ... P17198 38599770
    708845 8wq2:AS8E (4.1) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    708846 8wq2:AS8P (4.1) BS01 rna ? GO:0003735 ... O05636 38599770
    708847 8wq2:AS9P (4.1) BS01 rna ? GO:0000462 ... P39468 38599770
    708848 8wq2:S10P (4.1) BS01 rna ? GO:0000049 ... P17199 38599770
    708849 8wq2:S11P (4.1) BS01 rna ? GO:0003735 ... P39469 38599770
    708850 8wq2:S12P (4.1) BS01 rna ? GO:0003735 ... P11524 38599770
    708851 8wq2:S12P (4.1) BS02 rna ? GO:0003735 ... P11524 38599770
    708852 8wq2:S13P (4.1) BS01 rna ? GO:0003676 ... P39470 38599770
    708853 8wq2:S14P (4.1) BS01 rna ? GO:0003723 ... O05635 38599770
    708854 8wq2:S15P (4.1) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    708855 8wq2:S17E (4.1) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    708856 8wq2:S17P (4.1) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    708857 8wq2:S19E (4.1) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    708858 8wq2:S19P (4.1) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    708859 8wq2:S24E (4.1) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    708860 8wq2:S27A (4.1) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    708861 8wq2:S27E (4.1) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    708862 8wq2:S28E (4.1) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    708863 8wq2:S3AE (4.1) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    708864 8wq2:SL7A (4.1) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    708865 8wq4:AS2P (4.53) BS01 rna ? GO:0003735 ... P39478 38599770
    708866 8wq4:AS3P (4.53) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    708867 8wq4:AS4E (4.53) BS01 rna ? GO:0003723 ... O05634 38599770
    708868 8wq4:AS4P (4.53) BS01 rna ? GO:0003723 ... P39467 38599770
    708869 8wq4:AS5P (4.53) BS01 rna ? GO:0003723 ... O05641 38599770
    708870 8wq4:AS5P (4.53) BS02 UNK ? GO:0003723 ... O05641 38599770
    708871 8wq4:AS5P (4.53) BS03 UNK ? GO:0003723 ... O05641 38599770
    708872 8wq4:AS6E (4.53) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    708873 8wq4:AS7P (4.53) BS01 rna ? GO:0000028 ... P17198 38599770
    708874 8wq4:AS8E (4.53) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    708875 8wq4:AS8P (4.53) BS01 rna ? GO:0003735 ... O05636 38599770
    708876 8wq4:AS8P (4.53) BS02 UNK ? GO:0003735 ... O05636 38599770
    708877 8wq4:AS9P (4.53) BS01 rna ? GO:0000462 ... P39468 38599770
    708878 8wq4:S10P (4.53) BS01 rna ? GO:0000049 ... P17199 38599770
    708879 8wq4:S11P (4.53) BS01 rna ? GO:0003735 ... P39469 38599770
    708880 8wq4:S12P (4.53) BS01 rna ? GO:0003735 ... P11524 38599770
    708881 8wq4:S12P (4.53) BS02 rna ? GO:0003735 ... P11524 38599770
    708882 8wq4:S13P (4.53) BS01 rna ? GO:0003676 ... P39470 38599770
    708883 8wq4:S14P (4.53) BS01 rna ? GO:0003723 ... O05635 38599770
    708884 8wq4:S15P (4.53) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    708885 8wq4:S17E (4.53) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    708886 8wq4:S17P (4.53) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    708887 8wq4:S19E (4.53) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    708888 8wq4:S19P (4.53) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    708889 8wq4:S24E (4.53) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    708890 8wq4:S27A (4.53) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    708891 8wq4:S27E (4.53) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    708892 8wq4:S3AE (4.53) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    708893 8wq4:SL7A (4.53) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    708894 8wqa:B (3.39) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708895 8wqa:D (3.39) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708896 8wqb:J (3.37) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708897 8wqd:D (3.55) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708898 8wqe:B (3.38) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708899 8wqf:J (3.27) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708900 8wqh:D (3.44) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708901 8wqh:H (3.44) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708902 8wqi:D (3.5) BS01 peptide ? GO:0002070 ... Q9UK73 38670995
    708903 8wqm:A (1.796) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    708904 8wqm:A (1.796) BS02 AOQ 1.13.11.27 GO:0003868 ... P93836 N/A
    708905 8wr2:A (1.94) BS01 GLC 2.7.1.35 GO:0000287 ... O00764 38150934
    708906 8wr2:A (1.94) BS02 LU2 2.7.1.35 GO:0000287 ... O00764 38150934
    708907 8wr2:B (1.94) BS01 GLC 2.7.1.35 GO:0000287 ... O00764 38150934
    708908 8wr2:B (1.94) BS02 LU2 2.7.1.35 GO:0000287 ... O00764 38150934
    708909 8wrb:R (2.91) BS01 SER ? GO:0004930 ... Q9UPC5 38048360
    708910 8wrb:R (2.91) BS02 UBL ? GO:0004930 ... Q9UPC5 38048360
    708911 8wrz:A (3.6) BS01 peptide ? GO:0000139 ... P49407 38102480
    708912 8wrz:R (3.6) BS01 8D0 ? GO:0004930 ... P0ABE7
    P21554
    38102480
    708913 8wss:R (3.01) BS01 peptide N/A GO:0004930 ... Q99705 38710677
    708914 8wst:R (2.4) BS01 peptide N/A GO:0004930 ... Q969V1 38710677
    708915 8wsw:A (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    708916 8wsw:B (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    708917 8wsw:C (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    708918 8wsw:D (2.5) BS01 LH0 2.7.11.1 GO:0004672 ... P53671 N/A
    708919 8wt1:A (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708920 8wt1:B (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708921 8wt1:C (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708922 8wt1:D (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708923 8wt1:E (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708924 8wt1:F (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708925 8wt1:G (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708926 8wt1:H (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    708927 8wtb:B (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    708928 8wtb:D (2.9) BS01 ZN ? GO:0005507 ... P37569 38625935
    708929 8wtc:B (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    708930 8wtc:D (2.8) BS01 ZN ? GO:0005507 ... P37569 38625935
    708931 8wtf:A (2.0) BS01 8CG 2.7.11.1 GO:0000287 ... Q9NWZ3 N/A
    708932 8wu1:R (3.2) BS01 KCA ? GO:0004930 ... P21554
    P30518
    N/A
    708933 8wu8:A (2.81) BS01 peptide 3.1.11.2 GO:0000077 ... Q99638 38354779
    708934 8wuc:A (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708935 8wuc:B (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708936 8wuc:C (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708937 8wuc:D (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708938 8wuc:E (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708939 8wuc:F (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708940 8wuc:G (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708941 8wuc:H (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708942 8wuc:I (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708943 8wuc:J (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708944 8wuc:K (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708945 8wuc:L (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708946 8wuc:M (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708947 8wuc:N (2.5) BS01 ADP 5.6.1.7 GO:0005524 ... A0A2Z6DW38 38492570
    708948 8wue:A (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708949 8wue:B (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708950 8wue:C (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708951 8wue:D (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708952 8wue:E (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708953 8wue:F (3.089) BS01 ZWY N/A GO:0005634 ... Q6DCU6 38965213
    708954 8wus:A (2.9) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708955 8wus:A (2.9) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708956 8wus:A (2.9) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708957 8wut:A (3.0) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708958 8wut:A (3.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708959 8wut:A (3.0) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708960 8wuu:A (3.2) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708961 8wuu:A (3.2) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708962 8wuu:A (3.2) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708963 8wuv:A (3.0) BS01 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708964 8wuv:A (3.0) BS02 dna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708965 8wuv:A (3.0) BS03 rna 3.1.-.- GO:0003677 ... Q99ZW2 38811740
    708966 8wuw:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708967 8wuw:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708968 8wuw:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708969 8wuw:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708970 8wuw:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708971 8wuw:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708972 8wuw:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708973 8wuw:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708974 8wuw:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708975 8wuw:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708976 8wuw:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708977 8wuw:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708978 8wuw:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708979 8wuw:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708980 8wux:A (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708981 8wux:B (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708982 8wux:C (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708983 8wux:D (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708984 8wux:E (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708985 8wux:F (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708986 8wux:G (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708987 8wux:H (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708988 8wux:I (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708989 8wux:J (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708990 8wux:K (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708991 8wux:L (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708992 8wux:M (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708993 8wux:N (2.6) BS01 ANP 5.6.1.7 GO:0005524 ... D3DK86 38492570
    708994 8wuy:A (2.6) BS01 XBF ? GO:0003677 ... P22736 38232685
    708995 8wv8:A (2.93) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    708996 8wv8:A (2.93) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    708997 8wv8:B (2.93) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    708998 8wv8:B (2.93) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    708999 8wv8:B (2.93) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331
    709000 8wv8:B (2.93) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 38803331

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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