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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    708001 8wic:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    708002 8wic:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    708003 8wic:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    708004 8wic:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    708005 8wic:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    708006 8wic:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    708007 8wic:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    708008 8wic:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    708009 8wic:J (3.5) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    708010 8wic:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    708011 8wic:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    708012 8wic:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    708013 8wic:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    708014 8wic:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    708015 8wic:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    708016 8wic:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    708017 8wic:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    708018 8wic:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    708019 8wic:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    708020 8wic:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    708021 8wic:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    708022 8wic:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    708023 8wic:Z (3.5) BS02 rna ? GO:0003735 ... A0R150 38245551
    708024 8wid:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    708025 8wid:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    708026 8wid:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    708027 8wid:g (3.5) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    708028 8wid:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    708029 8wid:h (3.5) BS02 rna ? GO:0000028 ... A0QS97 38245551
    708030 8wid:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    708031 8wid:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    708032 8wid:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    708033 8wid:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    708034 8wid:l (3.5) BS02 rna ? GO:0003735 ... A0QSL6 38245551
    708035 8wid:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    708036 8wid:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    708037 8wid:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    708038 8wid:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    708039 8wid:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    708040 8wid:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    708041 8wid:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    708042 8wid:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    708043 8wid:t (3.5) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    708044 8wid:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    708045 8wid:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    708046 8wid:w (3.5) BS02 rna ? GO:0006417 ... A0QZ86 38245551
    708047 8wif:c (2.9) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    708048 8wif:d (2.9) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    708049 8wif:e (2.9) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    708050 8wif:f (2.9) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    708051 8wif:g (2.9) BS01 rna ? GO:0003735 ... A0R7F9 38245551
    708052 8wif:h (2.9) BS01 rna ? GO:0000028 ... A0QS97 38245551
    708053 8wif:i (2.9) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    708054 8wif:j (2.9) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    708055 8wif:k (2.9) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    708056 8wif:l (2.9) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    708057 8wif:m (2.9) BS01 rna ? GO:0000049 ... A0QS96 38245551
    708058 8wif:n (2.9) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    708059 8wif:o (2.9) BS01 rna ? GO:0003735 ... A0R550 38245551
    708060 8wif:p (2.9) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    708061 8wif:q (2.9) BS01 rna ? GO:0003735 ... A0QV37 38245551
    708062 8wif:r (2.9) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    708063 8wif:s (2.9) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    708064 8wif:t (2.9) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    708065 8wif:t (2.9) BS02 peptide ? GO:0000028 ... A0QSD5 38245551
    708066 8wif:u (2.9) BS01 rna ? GO:0003723 ... A0R102 38245551
    708067 8wif:w (2.9) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    708068 8wik:A (2.0) BS01 6FA 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    708069 8wik:A (2.0) BS02 NAD 1.6.5.- GO:0003677 ... Q9BRQ8 38414669
    708070 8wil:A (2.1) BS01 MG 3.6.4.13 GO:0001172 ... A0A7D0QVD8 38296832
    708071 8wim:A (1.84) BS01 MG 3.6.4.13 GO:0003968 ... A0A7D0QVD8 38296832
    708072 8wjy:A (1.88) BS01 W9X 2.7.11.1 GO:0004672 ... Q99640 38146659
    708073 8wkj:A (1.7) BS01 PLP 2.6.1.- GO:0003824 ... A0A130QXX8 37984176
    708074 8wkl:A (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708075 8wkl:B (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708076 8wkl:C (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708077 8wkl:D (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708078 8wkl:E (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708079 8wkl:F (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708080 8wkl:G (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708081 8wkl:H (2.67) BS01 F66 4.3.3.2 GO:0005773 ... P68175 38354931
    708082 8wko:A (2.91) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708083 8wko:A (2.91) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708084 8wko:B (2.91) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708085 8wko:B (2.91) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708086 8wkp:AS2P (4.62) BS01 rna ? GO:0003735 ... P39478 38599770
    708087 8wkp:AS2P (4.62) BS02 UNK ? GO:0003735 ... P39478 38599770
    708088 8wkp:AS2P (4.62) BS03 UNK ? GO:0003735 ... P39478 38599770
    708089 8wkp:AS2P (4.62) BS04 UNK ? GO:0003735 ... P39478 38599770
    708090 8wkp:AS2P (4.62) BS05 UNK ? GO:0003735 ... P39478 38599770
    708091 8wkp:AS3P (4.62) BS01 rna ? GO:0003676 ... Q4JB46 38599770
    708092 8wkp:AS4E (4.62) BS01 rna ? GO:0003723 ... O05634 38599770
    708093 8wkp:AS4P (4.62) BS01 rna ? GO:0003723 ... P39467 38599770
    708094 8wkp:AS5P (4.62) BS01 rna ? GO:0003723 ... O05641 38599770
    708095 8wkp:AS5P (4.62) BS02 UNK ? GO:0003723 ... O05641 38599770
    708096 8wkp:AS5P (4.62) BS03 UNK ? GO:0003723 ... O05641 38599770
    708097 8wkp:AS6E (4.62) BS01 rna ? GO:0003735 ... Q4JAI1 38599770
    708098 8wkp:AS7P (4.62) BS01 rna ? GO:0000028 ... P17198 38599770
    708099 8wkp:AS8E (4.62) BS01 rna ? GO:0000462 ... Q4JAP5 38599770
    708100 8wkp:AS8P (4.62) BS01 rna ? GO:0003735 ... O05636 38599770
    708101 8wkp:AS9P (4.62) BS01 rna ? GO:0000462 ... P39468 38599770
    708102 8wkp:S10P (4.62) BS01 rna ? GO:0000049 ... P17199 38599770
    708103 8wkp:S11P (4.62) BS01 rna ? GO:0003735 ... P39469 38599770
    708104 8wkp:S11P (4.62) BS02 rna ? GO:0003735 ... P39469 38599770
    708105 8wkp:S12P (4.62) BS01 rna ? GO:0003735 ... P11524 38599770
    708106 8wkp:S13P (4.62) BS01 rna ? GO:0003676 ... P39470 38599770
    708107 8wkp:S14P (4.62) BS01 rna ? GO:0003723 ... O05635 38599770
    708108 8wkp:S15P (4.62) BS01 rna ? GO:0003735 ... Q4JAI3 38599770
    708109 8wkp:S17E (4.62) BS01 rna ? GO:0003735 ... Q4JAX5 38599770
    708110 8wkp:S17P (4.62) BS01 rna ? GO:0003735 ... Q4JB49 38599770
    708111 8wkp:S19E (4.62) BS01 rna ? GO:0000028 ... Q4J8U1 38599770
    708112 8wkp:S19P (4.62) BS01 rna ? GO:0003723 ... Q4JB44 38599770
    708113 8wkp:S24E (4.62) BS01 rna ? GO:0003735 ... Q4JAF9 38599770
    708114 8wkp:S27A (4.62) BS01 rna ? GO:0003735 ... Q4JAG0 38599770
    708115 8wkp:S27E (4.62) BS01 rna ? GO:0003735 ... Q4J9B1 38599770
    708116 8wkp:S28E (4.62) BS01 rna ? GO:0003735 ... Q4JAV1 38599770
    708117 8wkp:S3AE (4.62) BS01 rna ? GO:0003735 ... Q4JB17 38599770
    708118 8wkp:SL7A (4.62) BS01 rna ? GO:0001682 ... Q4J8P1 38599770
    708119 8wkr:A (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708120 8wkr:A (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708121 8wkr:B (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708122 8wkr:B (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708123 8wkr:C (2.05) BS01 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708124 8wkr:C (2.05) BS02 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708125 8wkr:D (2.05) BS01 PRO ? GO:0003824 ... A0A0G9F7S9 38568076
    708126 8wkr:D (2.05) BS02 LLP ? GO:0003824 ... A0A0G9F7S9 38568076
    708127 8wlk:A (3.37) BS01 EBZ ? GO:0001975 ... Q05940 N/A
    708128 8wll:A (3.74) BS01 YHR ? GO:0001975 ... Q05940 N/A
    708129 8wlm:A (3.57) BS01 SRO ? GO:0001975 ... Q05940 N/A
    708130 8wlo:E (2.62) BS01 ZN N/A GO:0006508 ... N/A 38591877
    708131 8wlr:A (3.12) BS01 ZN N/A GO:0006508 ... N/A 38591877
    708132 8wls:A (-1.00) BS01 peptide ? GO:0042981 ... Q07817 38377677
    708133 8wm0:A (2.8) BS01 peptide 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    708134 8wm0:A (2.8) BS02 ADN 2.7.11.1 GO:0004672 ... Q9UKE5 38491946
    708135 8wm4:A (2.93) BS01 rna ? GO:0051607 ... A0A401FT36 38735995
    708136 8wm4:A (2.93) BS02 ZN ? GO:0051607 ... A0A401FT36 38735995
    708137 8wm4:A (2.93) BS03 ZN ? GO:0051607 ... A0A401FT36 38735995
    708138 8wm4:A (2.93) BS04 ZN ? GO:0051607 ... A0A401FT36 38735995
    708139 8wm6:A (2.7) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708140 8wm6:A (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708141 8wm6:A (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708142 8wm6:A (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708143 8wm6:A (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708144 8wm6:A (2.7) BS06 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708145 8wm6:A (2.7) BS07 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708146 8wm6:A (2.7) BS08 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708147 8wm6:A (2.7) BS09 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708148 8wm6:A (2.7) BS10 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708149 8wm6:A (2.7) BS11 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708150 8wm6:A (2.7) BS12 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708151 8wm6:A (2.7) BS13 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708152 8wm6:A (2.7) BS14 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708153 8wm6:A (2.7) BS15 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708154 8wm6:A (2.7) BS16 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708155 8wm6:A (2.7) BS17 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708156 8wm6:A (2.7) BS18 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708157 8wm6:A (2.7) BS19 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708158 8wm6:A (2.7) BS20 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708159 8wm6:A (2.7) BS21 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708160 8wm6:A (2.7) BS22 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708161 8wm6:A (2.7) BS23 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708162 8wm6:A (2.7) BS24 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708163 8wm6:A (2.7) BS25 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708164 8wm6:A (2.7) BS26 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708165 8wm6:A (2.7) BS27 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708166 8wm6:A (2.7) BS28 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708167 8wm6:A (2.7) BS29 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708168 8wm6:A (2.7) BS30 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708169 8wm6:A (2.7) BS31 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708170 8wm6:A (2.7) BS32 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708171 8wm6:A (2.7) BS33 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708172 8wm6:A (2.7) BS34 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708173 8wm6:A (2.7) BS35 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708174 8wm6:A (2.7) BS36 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708175 8wm6:A (2.7) BS37 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708176 8wm6:A (2.7) BS38 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708177 8wm6:A (2.7) BS39 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708178 8wm6:A (2.7) BS40 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708179 8wm6:A (2.7) BS41 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708180 8wm6:A (2.7) BS42 PQN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708181 8wm6:A (2.7) BS43 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708182 8wm6:A (2.7) BS44 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708183 8wm6:A (2.7) BS45 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708184 8wm6:A (2.7) BS46 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708185 8wm6:A (2.7) BS47 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708186 8wm6:A (2.7) BS48 SF4 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708187 8wm6:A (2.7) BS49 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708188 8wm6:A (2.7) BS50 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708189 8wm6:A (2.7) BS51 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708190 8wm6:A (2.7) BS52 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708191 8wm6:A (2.7) BS53 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708192 8wm6:A (2.7) BS54 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708193 8wm6:A (2.7) BS55 II0 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708194 8wm6:A (2.7) BS56 CLA 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708195 8wm6:A (2.7) BS57 WVN 1.97.1.12 GO:0000287 ... A6MVZ7 38734819
    708196 8wm6:B (2.7) BS01 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    708197 8wm6:B (2.7) BS02 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    708198 8wm6:B (2.7) BS03 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    708199 8wm6:B (2.7) BS04 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    708200 8wm6:B (2.7) BS05 CLA 1.97.1.12 GO:0000287 ... A6MVZ6 38734819
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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