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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 1cwq:B (2.25) BS01 RET ? GO:0005216 ... P02945 10949308
    5202 1cwq:B (2.25) BS02 RET ? GO:0005216 ... P02945 10949308
    5203 1cwr:A (2.1) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    5204 1cws:A (2.0) BS01 WO4 3.1.3.48 GO:0004725 ... P30305 10543950 BindingDB: IC50=30000nM
    5205 1cws:A (2.0) BS02 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    5206 1cwt:A (2.3) BS01 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    5207 1cwt:A (2.3) BS02 SO4 3.1.3.48 GO:0004725 ... P30305 10543950
    5208 1cwt:A (2.3) BS03 CL 3.1.3.48 GO:0004725 ... P30305 10543950
    5209 1cwu:A (2.5) BS01 NAD 1.3.1.9 GO:0004318 ... P80030 10521472
    5210 1cwu:A (2.5) BS02 TDB 1.3.1.9 GO:0004318 ... P80030 10521472
    5211 1cwu:B (2.5) BS01 NAD 1.3.1.9 GO:0004318 ... P80030 10521472
    5212 1cwu:B (2.5) BS02 TDB 1.3.1.9 GO:0004318 ... P80030 10521472
    5213 1cx2:A (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5214 1cx2:A (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    5215 1cx2:B (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5216 1cx2:B (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    5217 1cx2:C (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5218 1cx2:C (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    5219 1cx2:D (3.0) BS01 HEM 1.14.99.1 GO:0001516 ... Q05769 8967954
    5220 1cx2:D (3.0) BS02 S58 1.14.99.1 GO:0001516 ... Q05769 8967954
    5221 1cx4:A (2.45) BS01 CMP ? GO:0001932 ... P12369 11342137
    5222 1cx4:A (2.45) BS02 CMP ? GO:0001932 ... P12369 11342137
    5223 1cx9:A (2.3) BS01 NHP 4.2.1.20 GO:0000162 ... P00929 10504236 MOAD: ic50=178nM
    PDBbind: -logKd/Ki=6.75, IC50=178nM
    5224 1cx9:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 10504236
    5225 1cxa:A (2.2) BS01 IMD ? GO:0009055 ... P0C0X8 15299423
    5226 1cxa:A (2.2) BS02 HEC ? GO:0009055 ... P0C0X8 15299423
    5227 1cxc:A (1.6) BS01 HEC ? GO:0009055 ... P0C0X8 15299423
    5228 1cxe:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5229 1cxe:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5230 1cxe:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5231 1cxe:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5232 1cxe:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5233 1cxe:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5234 1cxe:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5235 1cxe:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5236 1cxe:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5237 1cxe:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5238 1cxe:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5239 1cxf:A (2.1) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5240 1cxf:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5241 1cxf:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5242 1cxf:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5243 1cxf:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5244 1cxf:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5245 1cxf:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5246 1cxf:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5247 1cxf:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5248 1cxf:A (2.1) BS10 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5249 1cxf:A (2.1) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5250 1cxh:A (2.41) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5251 1cxh:A (2.41) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5252 1cxh:A (2.41) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5253 1cxh:A (2.41) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5254 1cxh:A (2.41) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5255 1cxh:A (2.41) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5256 1cxh:A (2.41) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5257 1cxh:A (2.41) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5258 1cxh:A (2.41) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5259 1cxh:A (2.41) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5260 1cxh:A (2.41) BS11 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5261 1cxh:A (2.41) BS12 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5262 1cxi:A (2.2) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5263 1cxi:A (2.2) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5264 1cxi:A (2.2) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5265 1cxi:A (2.2) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5266 1cxi:A (2.2) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5267 1cxi:A (2.2) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 7493956
    5268 1cxi:A (2.2) BS07 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5269 1cxi:A (2.2) BS08 CA 2.4.1.19 GO:0003824 ... P43379 7493956
    5270 1cxk:A (2.09) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5271 1cxk:A (2.09) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5272 1cxk:A (2.09) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5273 1cxk:A (2.09) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5274 1cxk:A (2.09) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5275 1cxk:A (2.09) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5276 1cxk:A (2.09) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5277 1cxk:A (2.09) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5278 1cxk:A (2.09) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5279 1cxk:A (2.09) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5280 1cxk:A (2.09) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5281 1cxk:A (2.09) BS12 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5282 1cxk:A (2.09) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5283 1cxk:A (2.09) BS14 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    5284 1cxk:A (2.09) BS15 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    5285 1cxl:A (1.81) BS01 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5286 1cxl:A (1.81) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5287 1cxl:A (1.81) BS03 G4D 2.4.1.19 GO:0003824 ... P43379 10331869
    5288 1cxl:A (1.81) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5289 1cxl:A (1.81) BS05 G4D 2.4.1.19 GO:0003824 ... P43379 10331869
    5290 1cxl:A (1.81) BS06 GLF 2.4.1.19 GO:0003824 ... P43379 10331869
    5291 1cxl:A (1.81) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5292 1cxl:A (1.81) BS08 GLF 2.4.1.19 GO:0003824 ... P43379 10331869
    5293 1cxl:A (1.81) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 10331869
    5294 1cxl:A (1.81) BS10 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    5295 1cxl:A (1.81) BS11 CA 2.4.1.19 GO:0003824 ... P43379 10331869
    5296 1cxp:A (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    5297 1cxp:B (1.8) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    5298 1cxp:C (1.8) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    5299 1cxp:C (1.8) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    5300 1cxp:C (1.8) BS03 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    5301 1cxp:C (1.8) BS04 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    5302 1cxp:D (1.8) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 10766826
    5303 1cxp:D (1.8) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 10766826
    5304 1cxp:D (1.8) BS03 CL 1.11.2.2 GO:0004601 ... P05164 10766826
    5305 1cxp:D (1.8) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 10766826
    5306 1cxp:D (1.8) BS05 CA 1.11.2.2 GO:0004601 ... P05164 10766826
    5307 1cxv:A (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    5308 1cxv:A (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    5309 1cxv:A (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    5310 1cxv:A (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    5311 1cxv:A (2.0) BS05 CBP 3.4.24.- GO:0004222 ... P33435 10525409
    5312 1cxv:B (2.0) BS01 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    5313 1cxv:B (2.0) BS02 ZN 3.4.24.- GO:0004222 ... P33435 10525409
    5314 1cxv:B (2.0) BS03 CA 3.4.24.- GO:0004222 ... P33435 10525409
    5315 1cxv:B (2.0) BS04 CA 3.4.24.- GO:0004222 ... P33435 10525409
    5316 1cxv:B (2.0) BS05 CBP 3.4.24.- GO:0004222 ... P33435 10525409
    5317 1cxz:A (2.2) BS01 MG 3.6.5.2 GO:0000902 ... P61586 10619026
    5318 1cxz:A (2.2) BS02 GSP 3.6.5.2 GO:0000902 ... P61586 10619026
    5319 1cy1:A (2.3) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5320 1cy1:A (2.3) BS02 THP 5.6.2.1 GO:0003677 ... P06612 10504732
    5321 1cy1:A (2.3) BS03 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5322 1cy2:A (2.3) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5323 1cy2:A (2.3) BS02 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5324 1cy4:A (2.55) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5325 1cy5:A (1.3) BS01 ZN ? GO:0002020 ... O14727 10543941
    5326 1cy5:A (1.3) BS02 ZN ? GO:0002020 ... O14727 10543941
    5327 1cy5:A (1.3) BS03 ZN ? GO:0002020 ... O14727 10543941
    5328 1cy5:A (1.3) BS04 ZN ? GO:0002020 ... O14727 10543941
    5329 1cy6:A (2.5) BS01 T3P 5.6.2.1 GO:0003677 ... P06612 10504732
    5330 1cy7:A (2.4) BS01 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5331 1cy7:A (2.4) BS02 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5332 1cy7:A (2.4) BS03 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5333 1cy8:A (2.45) BS01 T3P 5.6.2.1 GO:0003677 ... P06612 10504732
    5334 1cy8:A (2.45) BS02 TMP 5.6.2.1 GO:0003677 ... P06612 10504732
    5335 1cyc:A (2.3) BS01 HEC ? GO:0005739 ... P00025 166072
    5336 1cyc:B (2.3) BS01 HEC ? GO:0005739 ... P00025 166072
    5337 1cyd:A (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    5338 1cyd:A (1.8) BS02 IPA 1.1.1.184 GO:0004090 ... P08074 8805511
    5339 1cyd:B (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    5340 1cyd:B (1.8) BS02 IPA 1.1.1.184 GO:0004090 ... P08074 8805511
    5341 1cyd:C (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    5342 1cyd:C (1.8) BS02 IPA 1.1.1.184 GO:0004090 ... P08074 8805511
    5343 1cyd:D (1.8) BS01 NDP 1.1.1.184 GO:0004090 ... P08074 8805511
    5344 1cyd:D (1.8) BS02 IPA 1.1.1.184 GO:0004090 ... P08074 8805511
    5345 1cyf:A (2.35) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8547245
    5346 1cyg:A (2.5) BS01 CA 2.4.1.19 GO:0003824 ... P31797 N/A
    5347 1cyg:A (2.5) BS02 CA 2.4.1.19 GO:0003824 ... P31797 N/A
    5348 1cyn:A (1.85) BS01 peptide 5.2.1.8 GO:0000413 ... P23284 8197205
    5349 1cyq:A (1.93) BS01 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5350 1cyq:A (1.93) BS02 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5351 1cyq:A (1.93) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5352 1cyq:A (1.93) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5353 1cyq:B (1.93) BS01 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5354 1cyq:B (1.93) BS02 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5355 1cyq:B (1.93) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5356 1cyq:B (1.93) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5357 1cyx:A (2.3) BS01 CUA 1.10.3.- GO:0004129 ... P0ABJ1 8618822
    5358 1cz0:A (2.1) BS01 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5359 1cz0:A (2.1) BS02 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5360 1cz0:A (2.1) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5361 1cz0:A (2.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5362 1cz0:B (2.1) BS01 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5363 1cz0:B (2.1) BS02 dna 3.1.-.- GO:0004519 ... Q94702 10581547
    5364 1cz0:B (2.1) BS03 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5365 1cz0:B (2.1) BS04 ZN 3.1.-.- GO:0004519 ... Q94702 10581547
    5366 1cz2:A (-1.00) BS01 E2P ? GO:0006869 ... P24296 10672021
    5367 1cz7:A (2.9) BS01 ADP 3.6.4.- GO:0003777 ... P20480 10574799
    5368 1cz7:B (2.9) BS01 ADP 3.6.4.- GO:0003777 ... P20480 10574799
    5369 1cz7:C (2.9) BS01 ADP 3.6.4.- GO:0003777 ... P20480 10574799
    5370 1cz7:D (2.9) BS01 ADP 3.6.4.- GO:0003777 ... P20480 10574799
    5371 1cza:N (1.9) BS01 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    5372 1cza:N (1.9) BS02 G6P 2.7.1.1 GO:0001678 ... P19367 10686099
    5373 1cza:N (1.9) BS03 GLC 2.7.1.1 GO:0001678 ... P19367 10686099
    5374 1cza:N (1.9) BS04 G6P 2.7.1.1 GO:0001678 ... P19367 10686099
    5375 1cza:N (1.9) BS05 ADP 2.7.1.1 GO:0001678 ... P19367 10686099
    5376 1czc:A (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 10731702
    5377 1czc:A (2.5) BS02 GUA 2.6.1.1 GO:0003824 ... P00509 10731702 MOAD: Kd=1.5mM
    PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    5378 1cze:A (2.4) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 10731702
    5379 1czf:B (1.68) BS01 ZN 3.2.1.15 GO:0004650 ... P26214 10521427
    5380 1czi:E (2.3) BS01 peptide 3.4.23.4 GO:0004190 ... P00794 9862200
    5381 1czj:A (2.16) BS01 SO4 ? GO:0009055 ... P38554 8740362
    5382 1czj:A (2.16) BS02 HEM ? GO:0009055 ... P38554 8740362
    5383 1czj:A (2.16) BS03 HEM ? GO:0009055 ... P38554 8740362
    5384 1czj:A (2.16) BS04 HEM ? GO:0009055 ... P38554 8740362
    5385 1czj:A (2.16) BS05 HEM ? GO:0009055 ... P38554 8740362
    5386 1czm:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 7932756
    5387 1czm:A (2.0) BS02 AAS 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 7932756
    5388 1czp:A (1.17) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    5389 1czp:B (1.17) BS01 FES ? GO:0005515 ... P0A3C8 10625442
    5390 1czy:A (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5391 1czy:C (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5392 1czz:A (2.7) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5393 1czz:B (2.7) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5394 1d00:A (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5395 1d00:B (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5396 1d00:C (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5397 1d00:D (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5398 1d00:D (2.0) BS02 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5399 1d00:E (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213
    5400 1d00:F (2.0) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 10518213

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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