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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47601 1vy5:BD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    47602 1vy5:BD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    47603 1vy5:BD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    47604 1vy5:BD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    47605 1vy5:BD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    47606 1vy5:BD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    47607 1vy5:BD (2.55) BS09 MG ? GO:0002181 ... P60405 25132179
    47608 1vy5:BD (2.55) BS10 MG ? GO:0002181 ... P60405 25132179
    47609 1vy5:BD (2.55) BS11 MG ? GO:0002181 ... P60405 25132179
    47610 1vy5:BE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    47611 1vy5:BE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    47612 1vy5:BE (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    47613 1vy5:BE (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 25132179
    47614 1vy5:BF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    47615 1vy5:BF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    47616 1vy5:BF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    47617 1vy5:BF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    47618 1vy5:BF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    47619 1vy5:BF (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    47620 1vy5:BF (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    47621 1vy5:BF (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    47622 1vy5:BF (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    47623 1vy5:BF (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 25132179
    47624 1vy5:BG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    47625 1vy5:BG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    47626 1vy5:BG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    47627 1vy5:BG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    47628 1vy5:BG (2.55) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    47629 1vy5:BH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    47630 1vy5:BI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    47631 1vy5:BN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    47632 1vy5:BN (2.55) BS02 MG ? GO:0003729 ... P60488 25132179
    47633 1vy5:BN (2.55) BS03 MG ? GO:0003729 ... P60488 25132179
    47634 1vy5:BN (2.55) BS04 MG ? GO:0003729 ... P60488 25132179
    47635 1vy5:BO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    47636 1vy5:BO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    47637 1vy5:BP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    47638 1vy5:BP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    47639 1vy5:BP (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    47640 1vy5:BQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    47641 1vy5:BQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    47642 1vy5:BQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    47643 1vy5:BQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    47644 1vy5:BQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    47645 1vy5:BQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    47646 1vy5:BQ (2.55) BS07 MG ? GO:0000049 ... P60489 25132179
    47647 1vy5:BR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    47648 1vy5:BR (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    47649 1vy5:BR (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    47650 1vy5:BS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    47651 1vy5:BS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    47652 1vy5:BT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    47653 1vy5:BT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    47654 1vy5:BU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    47655 1vy5:BU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    47656 1vy5:BU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    47657 1vy5:BU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    47658 1vy5:BU (2.55) BS05 MG ? GO:0000027 ... P60491 25132179
    47659 1vy5:BU (2.55) BS06 MG ? GO:0000027 ... P60491 25132179
    47660 1vy5:BU (2.55) BS07 MG ? GO:0000027 ... P60491 25132179
    47661 1vy5:BU (2.55) BS08 MG ? GO:0000027 ... P60491 25132179
    47662 1vy5:BV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    47663 1vy5:BV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    47664 1vy5:BV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    47665 1vy5:BV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    47666 1vy5:BV (2.55) BS05 MG ? GO:0003723 ... P60492 25132179
    47667 1vy5:BV (2.55) BS06 MG ? GO:0003723 ... P60492 25132179
    47668 1vy5:BW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    47669 1vy5:BW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    47670 1vy5:BW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    47671 1vy5:BW (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 25132179
    47672 1vy5:BX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    47673 1vy5:BX (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    47674 1vy5:BX (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 25132179
    47675 1vy5:BY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    47676 1vy5:BY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    47677 1vy5:BZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    47678 1vy5:BZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    47679 1vy5:CB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    47680 1vy5:CC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    47681 1vy5:CD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    47682 1vy5:CD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    47683 1vy5:CE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    47684 1vy5:CE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    47685 1vy5:CF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    47686 1vy5:CF (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    47687 1vy5:CG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    47688 1vy5:CG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    47689 1vy5:CH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    47690 1vy5:CI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    47691 1vy5:CI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    47692 1vy5:CJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    47693 1vy5:CK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    47694 1vy5:CK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    47695 1vy5:CL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    47696 1vy5:CM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    47697 1vy5:CM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    47698 1vy5:CM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    47699 1vy5:CN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    47700 1vy5:CN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    47701 1vy5:CO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    47702 1vy5:CO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    47703 1vy5:CP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    47704 1vy5:CQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    47705 1vy5:CR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    47706 1vy5:CS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    47707 1vy5:CT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    47708 1vy5:CT (2.55) BS02 MG ? GO:0003723 ... P80380 25132179
    47709 1vy5:D0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    47710 1vy5:D0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    47711 1vy5:D1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    47712 1vy5:D1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    47713 1vy5:D2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    47714 1vy5:D3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    47715 1vy5:D3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    47716 1vy5:D4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    47717 1vy5:D4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    47718 1vy5:D5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    47719 1vy5:D5 (2.55) BS02 ZN ? GO:0003735 ... P80339 25132179
    47720 1vy5:D6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    47721 1vy5:D6 (2.55) BS02 ZN ? GO:0000049 ... P35871 25132179
    47722 1vy5:D7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    47723 1vy5:D8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    47724 1vy5:D9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    47725 1vy5:D9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    47726 1vy5:DD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    47727 1vy5:DD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    47728 1vy5:DD (2.55) BS03 MG ? GO:0002181 ... P60405 25132179
    47729 1vy5:DD (2.55) BS04 MG ? GO:0002181 ... P60405 25132179
    47730 1vy5:DD (2.55) BS05 MG ? GO:0002181 ... P60405 25132179
    47731 1vy5:DD (2.55) BS06 MG ? GO:0002181 ... P60405 25132179
    47732 1vy5:DD (2.55) BS07 MG ? GO:0002181 ... P60405 25132179
    47733 1vy5:DD (2.55) BS08 MG ? GO:0002181 ... P60405 25132179
    47734 1vy5:DE (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    47735 1vy5:DE (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    47736 1vy5:DF (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    47737 1vy5:DF (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    47738 1vy5:DF (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    47739 1vy5:DF (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    47740 1vy5:DF (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    47741 1vy5:DG (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    47742 1vy5:DG (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    47743 1vy5:DG (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    47744 1vy5:DG (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    47745 1vy5:DH (2.55) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    47746 1vy5:DI (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    47747 1vy5:DN (2.55) BS01 rna ? GO:0003729 ... P60488 25132179
    47748 1vy5:DO (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    47749 1vy5:DO (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    47750 1vy5:DP (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    47751 1vy5:DP (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    47752 1vy5:DQ (2.55) BS01 rna ? GO:0000049 ... P60489 25132179
    47753 1vy5:DQ (2.55) BS02 rna ? GO:0000049 ... P60489 25132179
    47754 1vy5:DQ (2.55) BS03 rna ? GO:0000049 ... P60489 25132179
    47755 1vy5:DQ (2.55) BS04 MG ? GO:0000049 ... P60489 25132179
    47756 1vy5:DQ (2.55) BS05 MG ? GO:0000049 ... P60489 25132179
    47757 1vy5:DQ (2.55) BS06 MG ? GO:0000049 ... P60489 25132179
    47758 1vy5:DR (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    47759 1vy5:DS (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    47760 1vy5:DS (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    47761 1vy5:DT (2.55) BS01 rna ? GO:0003735 ... P60490 25132179
    47762 1vy5:DT (2.55) BS02 rna ? GO:0003735 ... P60490 25132179
    47763 1vy5:DU (2.55) BS01 rna ? GO:0000027 ... P60491 25132179
    47764 1vy5:DU (2.55) BS02 MG ? GO:0000027 ... P60491 25132179
    47765 1vy5:DU (2.55) BS03 MG ? GO:0000027 ... P60491 25132179
    47766 1vy5:DU (2.55) BS04 MG ? GO:0000027 ... P60491 25132179
    47767 1vy5:DV (2.55) BS01 rna ? GO:0003723 ... P60492 25132179
    47768 1vy5:DV (2.55) BS02 MG ? GO:0003723 ... P60492 25132179
    47769 1vy5:DV (2.55) BS03 MG ? GO:0003723 ... P60492 25132179
    47770 1vy5:DV (2.55) BS04 MG ? GO:0003723 ... P60492 25132179
    47771 1vy5:DW (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    47772 1vy5:DW (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    47773 1vy5:DW (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 25132179
    47774 1vy5:DX (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    47775 1vy5:DY (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    47776 1vy5:DY (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    47777 1vy5:DZ (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    47778 1vy5:DZ (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    47779 1vy6:AB (2.9) BS01 rna ? GO:0003735 ... P80371 25132179
    47780 1vy6:AC (2.9) BS01 rna ? GO:0003676 ... P80372 25132179
    47781 1vy6:AD (2.9) BS01 rna ? GO:0003723 ... P80373 25132179
    47782 1vy6:AD (2.9) BS02 SF4 ? GO:0003723 ... P80373 25132179
    47783 1vy6:AE (2.9) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    47784 1vy6:AF (2.9) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    47785 1vy6:AG (2.9) BS01 rna ? GO:0000028 ... P17291 25132179
    47786 1vy6:AH (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    47787 1vy6:AI (2.9) BS01 rna ? GO:0000049 ... P80374 25132179
    47788 1vy6:AI (2.9) BS02 rna ? GO:0000049 ... P80374 25132179
    47789 1vy6:AJ (2.9) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    47790 1vy6:AK (2.9) BS01 rna ? GO:0003735 ... P80376 25132179
    47791 1vy6:AK (2.9) BS02 MG ? GO:0003735 ... P80376 25132179
    47792 1vy6:AL (2.9) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    47793 1vy6:AL (2.9) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    47794 1vy6:AL (2.9) BS03 MG ? GO:0000049 ... Q5SHN3 25132179
    47795 1vy6:AM (2.9) BS01 rna ? GO:0000049 ... P80377 25132179
    47796 1vy6:AM (2.9) BS02 rna ? GO:0000049 ... P80377 25132179
    47797 1vy6:AM (2.9) BS03 MG ? GO:0000049 ... P80377 25132179
    47798 1vy6:AN (2.9) BS01 rna N/A GO:0003735 ... N/A 25132179
    47799 1vy6:AN (2.9) BS02 ZN N/A GO:0003735 ... N/A 25132179
    47800 1vy6:AO (2.9) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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