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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47401 1vy4:BG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    47402 1vy4:BG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    47403 1vy4:BG (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 25132179
    47404 1vy4:BH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    47405 1vy4:BH (2.6) BS02 MG ? GO:0002181 ... P0DOY8 25132179
    47406 1vy4:BI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    47407 1vy4:BN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    47408 1vy4:BN (2.6) BS02 MG ? GO:0003729 ... P60488 25132179
    47409 1vy4:BO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    47410 1vy4:BO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    47411 1vy4:BP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    47412 1vy4:BP (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 25132179
    47413 1vy4:BP (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 25132179
    47414 1vy4:BQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    47415 1vy4:BQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    47416 1vy4:BQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    47417 1vy4:BQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    47418 1vy4:BQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    47419 1vy4:BR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    47420 1vy4:BR (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 25132179
    47421 1vy4:BR (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 25132179
    47422 1vy4:BS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    47423 1vy4:BS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    47424 1vy4:BT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    47425 1vy4:BT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    47426 1vy4:BU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    47427 1vy4:BU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    47428 1vy4:BU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    47429 1vy4:BU (2.6) BS04 MG ? GO:0000027 ... P60491 25132179
    47430 1vy4:BU (2.6) BS05 MG ? GO:0000027 ... P60491 25132179
    47431 1vy4:BU (2.6) BS06 MG ? GO:0000027 ... P60491 25132179
    47432 1vy4:BV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    47433 1vy4:BV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    47434 1vy4:BV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    47435 1vy4:BV (2.6) BS04 MG ? GO:0003723 ... P60492 25132179
    47436 1vy4:BV (2.6) BS05 MG ? GO:0003723 ... P60492 25132179
    47437 1vy4:BW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    47438 1vy4:BW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    47439 1vy4:BX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    47440 1vy4:BX (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 25132179
    47441 1vy4:BY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    47442 1vy4:BY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    47443 1vy4:BZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    47444 1vy4:BZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    47445 1vy4:CB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    47446 1vy4:CC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    47447 1vy4:CD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    47448 1vy4:CD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    47449 1vy4:CE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    47450 1vy4:CE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    47451 1vy4:CF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    47452 1vy4:CF (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 25132179
    47453 1vy4:CG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    47454 1vy4:CG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    47455 1vy4:CH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    47456 1vy4:CI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    47457 1vy4:CI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    47458 1vy4:CJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    47459 1vy4:CJ (2.6) BS02 MG ? GO:0000049 ... Q5SHN7 25132179
    47460 1vy4:CK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    47461 1vy4:CL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    47462 1vy4:CL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    47463 1vy4:CM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    47464 1vy4:CM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    47465 1vy4:CM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    47466 1vy4:CN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    47467 1vy4:CN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    47468 1vy4:CO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    47469 1vy4:CO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    47470 1vy4:CP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    47471 1vy4:CQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    47472 1vy4:CR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    47473 1vy4:CS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    47474 1vy4:CT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    47475 1vy4:CT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    47476 1vy4:D0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    47477 1vy4:D0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    47478 1vy4:D1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    47479 1vy4:D1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    47480 1vy4:D2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    47481 1vy4:D3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    47482 1vy4:D3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    47483 1vy4:D3 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    47484 1vy4:D4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    47485 1vy4:D4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    47486 1vy4:D5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    47487 1vy4:D5 (2.6) BS02 ZN ? GO:0003735 ... P80339 25132179
    47488 1vy4:D6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    47489 1vy4:D6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    47490 1vy4:D7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    47491 1vy4:D8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    47492 1vy4:D9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    47493 1vy4:D9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    47494 1vy4:DD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    47495 1vy4:DD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    47496 1vy4:DD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    47497 1vy4:DD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    47498 1vy4:DD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    47499 1vy4:DE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    47500 1vy4:DE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    47501 1vy4:DE (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 25132179
    47502 1vy4:DF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    47503 1vy4:DF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    47504 1vy4:DF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    47505 1vy4:DG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    47506 1vy4:DG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    47507 1vy4:DG (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 25132179
    47508 1vy4:DG (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 25132179
    47509 1vy4:DH (2.6) BS01 rna ? GO:0002181 ... P0DOY8 25132179
    47510 1vy4:DI (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 25132179
    47511 1vy4:DN (2.6) BS01 rna ? GO:0003729 ... P60488 25132179
    47512 1vy4:DO (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 25132179
    47513 1vy4:DO (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 25132179
    47514 1vy4:DP (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 25132179
    47515 1vy4:DQ (2.6) BS01 rna ? GO:0000049 ... P60489 25132179
    47516 1vy4:DQ (2.6) BS02 rna ? GO:0000049 ... P60489 25132179
    47517 1vy4:DQ (2.6) BS03 rna ? GO:0000049 ... P60489 25132179
    47518 1vy4:DQ (2.6) BS04 MG ? GO:0000049 ... P60489 25132179
    47519 1vy4:DQ (2.6) BS05 MG ? GO:0000049 ... P60489 25132179
    47520 1vy4:DR (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 25132179
    47521 1vy4:DS (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 25132179
    47522 1vy4:DS (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 25132179
    47523 1vy4:DT (2.6) BS01 rna ? GO:0003735 ... P60490 25132179
    47524 1vy4:DT (2.6) BS02 rna ? GO:0003735 ... P60490 25132179
    47525 1vy4:DU (2.6) BS01 rna ? GO:0000027 ... P60491 25132179
    47526 1vy4:DU (2.6) BS02 MG ? GO:0000027 ... P60491 25132179
    47527 1vy4:DU (2.6) BS03 MG ? GO:0000027 ... P60491 25132179
    47528 1vy4:DV (2.6) BS01 rna ? GO:0003723 ... P60492 25132179
    47529 1vy4:DV (2.6) BS02 MG ? GO:0003723 ... P60492 25132179
    47530 1vy4:DV (2.6) BS03 MG ? GO:0003723 ... P60492 25132179
    47531 1vy4:DW (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 25132179
    47532 1vy4:DW (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 25132179
    47533 1vy4:DX (2.6) BS01 rna ? GO:0000027 ... Q5SHP0 25132179
    47534 1vy4:DY (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 25132179
    47535 1vy4:DY (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 25132179
    47536 1vy4:DZ (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 25132179
    47537 1vy4:DZ (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 25132179
    47538 1vy5:AB (2.55) BS01 rna ? GO:0003735 ... P80371 25132179
    47539 1vy5:AC (2.55) BS01 rna ? GO:0003676 ... P80372 25132179
    47540 1vy5:AD (2.55) BS01 rna ? GO:0003723 ... P80373 25132179
    47541 1vy5:AD (2.55) BS02 SF4 ? GO:0003723 ... P80373 25132179
    47542 1vy5:AE (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    47543 1vy5:AE (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    47544 1vy5:AE (2.55) BS03 MG ? GO:0003723 ... Q5SHQ5 25132179
    47545 1vy5:AF (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    47546 1vy5:AG (2.55) BS01 rna ? GO:0000028 ... P17291 25132179
    47547 1vy5:AG (2.55) BS02 rna ? GO:0000028 ... P17291 25132179
    47548 1vy5:AH (2.55) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    47549 1vy5:AI (2.55) BS01 rna ? GO:0000049 ... P80374 25132179
    47550 1vy5:AI (2.55) BS02 rna ? GO:0000049 ... P80374 25132179
    47551 1vy5:AJ (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    47552 1vy5:AK (2.55) BS01 rna ? GO:0003735 ... P80376 25132179
    47553 1vy5:AK (2.55) BS02 MG ? GO:0003735 ... P80376 25132179
    47554 1vy5:AL (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    47555 1vy5:AL (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    47556 1vy5:AM (2.55) BS01 rna ? GO:0000049 ... P80377 25132179
    47557 1vy5:AM (2.55) BS02 rna ? GO:0000049 ... P80377 25132179
    47558 1vy5:AM (2.55) BS03 rna ? GO:0000049 ... P80377 25132179
    47559 1vy5:AM (2.55) BS04 MG ? GO:0000049 ... P80377 25132179
    47560 1vy5:AN (2.55) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    47561 1vy5:AN (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    47562 1vy5:AO (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    47563 1vy5:AO (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    47564 1vy5:AP (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    47565 1vy5:AQ (2.55) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    47566 1vy5:AR (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    47567 1vy5:AS (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    47568 1vy5:AT (2.55) BS01 rna ? GO:0003723 ... P80380 25132179
    47569 1vy5:B0 (2.55) BS01 rna ? GO:0003735 ... P60493 25132179
    47570 1vy5:B0 (2.55) BS02 rna ? GO:0003735 ... P60493 25132179
    47571 1vy5:B0 (2.55) BS03 MG ? GO:0003735 ... P60493 25132179
    47572 1vy5:B1 (2.55) BS01 rna ? GO:0003735 ... P60494 25132179
    47573 1vy5:B1 (2.55) BS02 rna ? GO:0003735 ... P60494 25132179
    47574 1vy5:B1 (2.55) BS03 MG ? GO:0003735 ... P60494 25132179
    47575 1vy5:B2 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    47576 1vy5:B3 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    47577 1vy5:B3 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    47578 1vy5:B3 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 25132179
    47579 1vy5:B3 (2.55) BS04 MG ? GO:0003735 ... Q5SHQ6 25132179
    47580 1vy5:B4 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    47581 1vy5:B4 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    47582 1vy5:B5 (2.55) BS01 rna ? GO:0003735 ... P80339 25132179
    47583 1vy5:B5 (2.55) BS02 MG ? GO:0003735 ... P80339 25132179
    47584 1vy5:B5 (2.55) BS03 MG ? GO:0003735 ... P80339 25132179
    47585 1vy5:B5 (2.55) BS04 ZN ? GO:0003735 ... P80339 25132179
    47586 1vy5:B6 (2.55) BS01 rna ? GO:0000049 ... P35871 25132179
    47587 1vy5:B6 (2.55) BS02 MG ? GO:0000049 ... P35871 25132179
    47588 1vy5:B6 (2.55) BS03 ZN ? GO:0000049 ... P35871 25132179
    47589 1vy5:B7 (2.55) BS01 rna ? GO:0003735 ... P80340 25132179
    47590 1vy5:B7 (2.55) BS02 MG ? GO:0003735 ... P80340 25132179
    47591 1vy5:B7 (2.55) BS03 MG ? GO:0003735 ... P80340 25132179
    47592 1vy5:B7 (2.55) BS04 MG ? GO:0003735 ... P80340 25132179
    47593 1vy5:B7 (2.55) BS05 MG ? GO:0003735 ... P80340 25132179
    47594 1vy5:B8 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    47595 1vy5:B8 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    47596 1vy5:B8 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 25132179
    47597 1vy5:B9 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    47598 1vy5:B9 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    47599 1vy5:BD (2.55) BS01 rna ? GO:0002181 ... P60405 25132179
    47600 1vy5:BD (2.55) BS02 rna ? GO:0002181 ... P60405 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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