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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47201 1vvj:QO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    47202 1vvj:QP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    47203 1vvj:QQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47204 1vvj:QR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    47205 1vvj:QS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    47206 1vvj:QT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    47207 1vvj:R0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    47208 1vvj:R0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    47209 1vvj:R0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    47210 1vvj:R1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    47211 1vvj:R2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    47212 1vvj:R3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    47213 1vvj:R3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    47214 1vvj:R4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    47215 1vvj:R5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    47216 1vvj:R6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    47217 1vvj:R7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    47218 1vvj:R8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    47219 1vvj:RD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    47220 1vvj:RD (3.44) BS02 rna ? GO:0002181 ... P60405 25128388
    47221 1vvj:RD (3.44) BS03 MG ? GO:0002181 ... P60405 25128388
    47222 1vvj:RE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    47223 1vvj:RF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    47224 1vvj:RG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    47225 1vvj:RG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    47226 1vvj:RH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47227 1vvj:RI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    47228 1vvj:RN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    47229 1vvj:RO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    47230 1vvj:RO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    47231 1vvj:RP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    47232 1vvj:RQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    47233 1vvj:RR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    47234 1vvj:RS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    47235 1vvj:RS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    47236 1vvj:RT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    47237 1vvj:RT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    47238 1vvj:RU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    47239 1vvj:RV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    47240 1vvj:RW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    47241 1vvj:RX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    47242 1vvj:RY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    47243 1vvj:RZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    47244 1vvj:XB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    47245 1vvj:XC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    47246 1vvj:XD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    47247 1vvj:XD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    47248 1vvj:XE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    47249 1vvj:XF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    47250 1vvj:XG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    47251 1vvj:XH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47252 1vvj:XI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    47253 1vvj:XI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    47254 1vvj:XJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    47255 1vvj:XK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    47256 1vvj:XL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    47257 1vvj:XM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    47258 1vvj:XM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    47259 1vvj:XM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    47260 1vvj:XN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47261 1vvj:XN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    47262 1vvj:XO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    47263 1vvj:XO (3.44) BS02 rna ? GO:0003735 ... Q5SJ76 25128388
    47264 1vvj:XP (3.44) BS01 rna ? GO:0003735 ... Q5SJH3 25128388
    47265 1vvj:XQ (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47266 1vvj:XR (3.44) BS01 rna ? GO:0003735 ... Q5SLQ0 25128388
    47267 1vvj:XS (3.44) BS01 rna ? GO:0000028 ... Q5SHP2 25128388
    47268 1vvj:XT (3.44) BS01 rna ? GO:0003723 ... P80380 25128388
    47269 1vvj:Y0 (3.44) BS01 rna ? GO:0003735 ... P60493 25128388
    47270 1vvj:Y0 (3.44) BS02 rna ? GO:0003735 ... P60493 25128388
    47271 1vvj:Y0 (3.44) BS03 rna ? GO:0003735 ... P60493 25128388
    47272 1vvj:Y1 (3.44) BS01 rna ? GO:0003735 ... P60494 25128388
    47273 1vvj:Y2 (3.44) BS01 rna ? GO:0003735 ... Q5SHP6 25128388
    47274 1vvj:Y3 (3.44) BS01 rna ? GO:0003735 ... Q5SHQ6 25128388
    47275 1vvj:Y3 (3.44) BS02 rna ? GO:0003735 ... Q5SHQ6 25128388
    47276 1vvj:Y4 (3.44) BS01 rna ? GO:0003735 ... Q5SJE1 25128388
    47277 1vvj:Y5 (3.44) BS01 rna ? GO:0003735 ... P80339 25128388
    47278 1vvj:Y6 (3.44) BS01 rna ? GO:0000049 ... P35871 25128388
    47279 1vvj:Y7 (3.44) BS01 rna ? GO:0003735 ... P80340 25128388
    47280 1vvj:Y8 (3.44) BS01 rna ? GO:0003735 ... Q5SKU1 25128388
    47281 1vvj:YD (3.44) BS01 rna ? GO:0002181 ... P60405 25128388
    47282 1vvj:YD (3.44) BS02 MG ? GO:0002181 ... P60405 25128388
    47283 1vvj:YE (3.44) BS01 rna ? GO:0003735 ... Q5SHN8 25128388
    47284 1vvj:YF (3.44) BS01 rna ? GO:0003735 ... Q5SHN9 25128388
    47285 1vvj:YG (3.44) BS01 rna ? GO:0000049 ... Q5SHQ0 25128388
    47286 1vvj:YG (3.44) BS02 rna ? GO:0000049 ... Q5SHQ0 25128388
    47287 1vvj:YH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47288 1vvj:YI (3.44) BS01 rna ? GO:0003735 ... Q5SLQ1 25128388
    47289 1vvj:YI (3.44) BS02 rna ? GO:0003735 ... Q5SLQ1 25128388
    47290 1vvj:YN (3.44) BS01 rna ? GO:0003729 ... P60488 25128388
    47291 1vvj:YO (3.44) BS01 rna ? GO:0003735 ... Q5SHP8 25128388
    47292 1vvj:YO (3.44) BS02 rna ? GO:0003735 ... Q5SHP8 25128388
    47293 1vvj:YP (3.44) BS01 rna ? GO:0003735 ... Q5SHQ7 25128388
    47294 1vvj:YQ (3.44) BS01 rna ? GO:0000049 ... P60489 25128388
    47295 1vvj:YR (3.44) BS01 rna ? GO:0003735 ... Q9Z9H5 25128388
    47296 1vvj:YS (3.44) BS01 rna ? GO:0003735 ... Q5SHQ4 25128388
    47297 1vvj:YS (3.44) BS02 rna ? GO:0003735 ... Q5SHQ4 25128388
    47298 1vvj:YT (3.44) BS01 rna ? GO:0003735 ... P60490 25128388
    47299 1vvj:YT (3.44) BS02 rna ? GO:0003735 ... P60490 25128388
    47300 1vvj:YU (3.44) BS01 rna ? GO:0000027 ... P60491 25128388
    47301 1vvj:YV (3.44) BS01 rna ? GO:0003723 ... P60492 25128388
    47302 1vvj:YW (3.44) BS01 rna ? GO:0003735 ... Q5SHP3 25128388
    47303 1vvj:YX (3.44) BS01 rna ? GO:0000027 ... Q5SHP0 25128388
    47304 1vvj:YY (3.44) BS01 rna ? GO:0003723 ... Q5SHP9 25128388
    47305 1vvj:YZ (3.44) BS01 rna ? GO:0003723 ... Q5SHZ1 25128388
    47306 1vwt:A (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    47307 1vwt:B (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    47308 1vwt:C (1.9) BS01 HEM ? GO:0004601 ... P69905 9649306
    47309 1vwt:D (1.9) BS01 HEM ? GO:0004601 ... P68871 9649306
    47310 1vxa:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47311 1vxb:A (2.0) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47312 1vxc:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47313 1vxd:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47314 1vxe:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47315 1vxf:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47316 1vxg:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47317 1vxh:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8642596
    47318 1vxo:A (2.4) BS01 VXA 3.1.1.7 GO:0001507 ... P04058 N/A
    47319 1vxr:A (2.2) BS01 VX 3.1.1.7 GO:0001507 ... P04058 N/A
    47320 1vy4:AB (2.6) BS01 rna ? GO:0003735 ... P80371 25132179
    47321 1vy4:AB (2.6) BS02 MG ? GO:0003735 ... P80371 25132179
    47322 1vy4:AC (2.6) BS01 rna ? GO:0003676 ... P80372 25132179
    47323 1vy4:AD (2.6) BS01 rna ? GO:0003723 ... P80373 25132179
    47324 1vy4:AD (2.6) BS02 SF4 ? GO:0003723 ... P80373 25132179
    47325 1vy4:AE (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 25132179
    47326 1vy4:AE (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 25132179
    47327 1vy4:AF (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 25132179
    47328 1vy4:AG (2.6) BS01 rna ? GO:0000028 ... P17291 25132179
    47329 1vy4:AG (2.6) BS02 rna ? GO:0000028 ... P17291 25132179
    47330 1vy4:AH (2.6) BS01 rna ? GO:0003735 ... P0DOY9 25132179
    47331 1vy4:AI (2.6) BS01 rna ? GO:0000049 ... P80374 25132179
    47332 1vy4:AI (2.6) BS02 rna ? GO:0000049 ... P80374 25132179
    47333 1vy4:AJ (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 25132179
    47334 1vy4:AK (2.6) BS01 rna ? GO:0003735 ... P80376 25132179
    47335 1vy4:AK (2.6) BS02 MG ? GO:0003735 ... P80376 25132179
    47336 1vy4:AL (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 25132179
    47337 1vy4:AL (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 25132179
    47338 1vy4:AM (2.6) BS01 rna ? GO:0000049 ... P80377 25132179
    47339 1vy4:AM (2.6) BS02 rna ? GO:0000049 ... P80377 25132179
    47340 1vy4:AM (2.6) BS03 rna ? GO:0000049 ... P80377 25132179
    47341 1vy4:AM (2.6) BS04 MG ? GO:0000049 ... P80377 25132179
    47342 1vy4:AN (2.6) BS01 rna ? GO:0003735 ... P0DOY6 25132179
    47343 1vy4:AN (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 25132179
    47344 1vy4:AO (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 25132179
    47345 1vy4:AO (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 25132179
    47346 1vy4:AP (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 25132179
    47347 1vy4:AQ (2.6) BS01 rna ? GO:0003735 ... P0DOY7 25132179
    47348 1vy4:AR (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 25132179
    47349 1vy4:AS (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 25132179
    47350 1vy4:AT (2.6) BS01 rna ? GO:0003723 ... P80380 25132179
    47351 1vy4:AT (2.6) BS02 MG ? GO:0003723 ... P80380 25132179
    47352 1vy4:B0 (2.6) BS01 rna ? GO:0003735 ... P60493 25132179
    47353 1vy4:B0 (2.6) BS02 rna ? GO:0003735 ... P60493 25132179
    47354 1vy4:B0 (2.6) BS03 MG ? GO:0003735 ... P60493 25132179
    47355 1vy4:B1 (2.6) BS01 rna ? GO:0003735 ... P60494 25132179
    47356 1vy4:B1 (2.6) BS02 rna ? GO:0003735 ... P60494 25132179
    47357 1vy4:B2 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 25132179
    47358 1vy4:B3 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 25132179
    47359 1vy4:B3 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 25132179
    47360 1vy4:B4 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 25132179
    47361 1vy4:B4 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 25132179
    47362 1vy4:B5 (2.6) BS01 rna ? GO:0003735 ... P80339 25132179
    47363 1vy4:B5 (2.6) BS02 MG ? GO:0003735 ... P80339 25132179
    47364 1vy4:B5 (2.6) BS03 ZN ? GO:0003735 ... P80339 25132179
    47365 1vy4:B6 (2.6) BS01 rna ? GO:0000049 ... P35871 25132179
    47366 1vy4:B6 (2.6) BS02 ZN ? GO:0000049 ... P35871 25132179
    47367 1vy4:B7 (2.6) BS01 rna ? GO:0003735 ... P80340 25132179
    47368 1vy4:B7 (2.6) BS02 MG ? GO:0003735 ... P80340 25132179
    47369 1vy4:B7 (2.6) BS03 MG ? GO:0003735 ... P80340 25132179
    47370 1vy4:B7 (2.6) BS04 MG ? GO:0003735 ... P80340 25132179
    47371 1vy4:B8 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 25132179
    47372 1vy4:B8 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 25132179
    47373 1vy4:B9 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 25132179
    47374 1vy4:B9 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 25132179
    47375 1vy4:BD (2.6) BS01 rna ? GO:0002181 ... P60405 25132179
    47376 1vy4:BD (2.6) BS02 rna ? GO:0002181 ... P60405 25132179
    47377 1vy4:BD (2.6) BS03 MG ? GO:0002181 ... P60405 25132179
    47378 1vy4:BD (2.6) BS04 MG ? GO:0002181 ... P60405 25132179
    47379 1vy4:BD (2.6) BS05 MG ? GO:0002181 ... P60405 25132179
    47380 1vy4:BD (2.6) BS06 MG ? GO:0002181 ... P60405 25132179
    47381 1vy4:BD (2.6) BS07 MG ? GO:0002181 ... P60405 25132179
    47382 1vy4:BD (2.6) BS08 MG ? GO:0002181 ... P60405 25132179
    47383 1vy4:BD (2.6) BS09 MG ? GO:0002181 ... P60405 25132179
    47384 1vy4:BD (2.6) BS10 MG ? GO:0002181 ... P60405 25132179
    47385 1vy4:BD (2.6) BS11 MG ? GO:0002181 ... P60405 25132179
    47386 1vy4:BD (2.6) BS12 MG ? GO:0002181 ... P60405 25132179
    47387 1vy4:BD (2.6) BS13 MG ? GO:0002181 ... P60405 25132179
    47388 1vy4:BE (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 25132179
    47389 1vy4:BE (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 25132179
    47390 1vy4:BF (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 25132179
    47391 1vy4:BF (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 25132179
    47392 1vy4:BF (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 25132179
    47393 1vy4:BF (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 25132179
    47394 1vy4:BF (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 25132179
    47395 1vy4:BF (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 25132179
    47396 1vy4:BF (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 25132179
    47397 1vy4:BF (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 25132179
    47398 1vy4:BF (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 25132179
    47399 1vy4:BG (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 25132179
    47400 1vy4:BG (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 25132179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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