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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47001 1vqn:S (2.4) BS01 rna ? GO:0000027 ... P12732 16306996
    47002 1vqn:T (2.4) BS01 rna ? GO:0002181 ... P10972 16306996
    47003 1vqn:T (2.4) BS02 MG ? GO:0002181 ... P10972 16306996
    47004 1vqn:U (2.4) BS01 rna ? GO:0003735 ... P14116 16306996
    47005 1vqn:V (2.4) BS01 rna ? GO:0003735 ... P10971 16306996
    47006 1vqn:W (2.4) BS01 rna ? GO:0000463 ... P14121 16306996
    47007 1vqn:W (2.4) BS02 rna ? GO:0000463 ... P14121 16306996
    47008 1vqn:X (2.4) BS01 rna ? GO:0002181 ... P18138 16306996
    47009 1vqn:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16306996
    47010 1vqn:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16306996
    47011 1vqn:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16306996
    47012 1vqo:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    47013 1vqo:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    47014 1vqo:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    47015 1vqo:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    47016 1vqo:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    47017 1vqo:A (2.2) BS03 MG ? GO:0002181 ... P20276 16285925
    47018 1vqo:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    47019 1vqo:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    47020 1vqo:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    47021 1vqo:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    47022 1vqo:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    47023 1vqo:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    47024 1vqo:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    47025 1vqo:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    47026 1vqo:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    47027 1vqo:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    47028 1vqo:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    47029 1vqo:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    47030 1vqo:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    47031 1vqo:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    47032 1vqo:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    47033 1vqo:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    47034 1vqo:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    47035 1vqo:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    47036 1vqo:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    47037 1vqo:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    47038 1vqo:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    47039 1vqo:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    47040 1vqo:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    47041 1vqo:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    47042 1vqo:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    47043 1vqo:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    47044 1vqo:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    47045 1vqo:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    47046 1vqo:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    47047 1vqo:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    47048 1vqp:1 (2.25) BS01 rna ? GO:0003723 ... P32410 16285925
    47049 1vqp:2 (2.25) BS01 rna ? GO:0003735 ... P22452 16285925
    47050 1vqp:3 (2.25) BS01 rna ? GO:0000049 ... P32411 16285925
    47051 1vqp:A (2.25) BS01 rna ? GO:0002181 ... P20276 16285925
    47052 1vqp:A (2.25) BS02 MG ? GO:0002181 ... P20276 16285925
    47053 1vqp:A (2.25) BS03 MG ? GO:0002181 ... P20276 16285925
    47054 1vqp:B (2.25) BS01 rna ? GO:0003723 ... P20279 16285925
    47055 1vqp:C (2.25) BS01 rna ? GO:0003723 ... P12735 16285925
    47056 1vqp:D (2.25) BS01 rna ? GO:0000049 ... P14124 16285925
    47057 1vqp:D (2.25) BS02 rna ? GO:0000049 ... P14124 16285925
    47058 1vqp:E (2.25) BS01 rna ? GO:0002181 ... P14135 16285925
    47059 1vqp:F (2.25) BS01 rna ? GO:0001682 ... P12743 16285925
    47060 1vqp:H (2.25) BS01 rna ? GO:0000027 ... P60617 16285925
    47061 1vqp:I (2.25) BS01 rna ? GO:0003735 ... P14122 16285925
    47062 1vqp:J (2.25) BS01 rna ? GO:0003729 ... P29198 16285925
    47063 1vqp:K (2.25) BS01 rna ? GO:0003735 ... P22450 16285925
    47064 1vqp:L (2.25) BS01 rna ? GO:0003735 ... P12737 16285925
    47065 1vqp:M (2.25) BS01 rna ? GO:0002181 ... P60618 16285925
    47066 1vqp:N (2.25) BS01 rna ? GO:0000027 ... P14123 16285925
    47067 1vqp:N (2.25) BS02 rna ? GO:0000027 ... P14123 16285925
    47068 1vqp:O (2.25) BS01 rna ? GO:0003723 ... P12733 16285925
    47069 1vqp:P (2.25) BS01 rna ? GO:0003723 ... P14119 16285925
    47070 1vqp:Q (2.25) BS01 rna ? GO:0003735 ... P12734 16285925
    47071 1vqp:Q (2.25) BS02 rna ? GO:0003735 ... P12734 16285925
    47072 1vqp:R (2.25) BS01 rna ? GO:0002181 ... P10970 16285925
    47073 1vqp:S (2.25) BS01 rna ? GO:0000027 ... P12732 16285925
    47074 1vqp:T (2.25) BS01 rna ? GO:0002181 ... P10972 16285925
    47075 1vqp:T (2.25) BS02 MG ? GO:0002181 ... P10972 16285925
    47076 1vqp:U (2.25) BS01 rna ? GO:0003735 ... P14116 16285925
    47077 1vqp:V (2.25) BS01 rna ? GO:0003735 ... P10971 16285925
    47078 1vqp:W (2.25) BS01 rna ? GO:0000463 ... P14121 16285925
    47079 1vqp:W (2.25) BS02 rna ? GO:0000463 ... P14121 16285925
    47080 1vqp:X (2.25) BS01 rna ? GO:0002181 ... P18138 16285925
    47081 1vqp:Y (2.25) BS01 rna ? GO:0000166 ... P12736 16285925
    47082 1vqp:Y (2.25) BS02 MG ? GO:0000166 ... P12736 16285925
    47083 1vqp:Z (2.25) BS01 rna ? GO:0003735 ... P60619 16285925
    47084 1vqw:A (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    47085 1vqw:B (2.4) BS01 FAD 1.14.13.- GO:0004497 ... Q9HFE4 16777962
    47086 1vr1:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    47087 1vr1:H (1.9) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 10543954
    47088 1vrc:A (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    47089 1vrc:B (-1.00) BS01 PO3 2.7.1.191 GO:0005737 ... P69797 15788390
    47090 1vrc:C (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    47091 1vrc:D (-1.00) BS01 PO3 ? GO:0004857 ... P0AA04 15788390
    47092 1vre:A (-1.00) BS01 HEM ? GO:0001666 ... P15447 9692983
    47093 1vrf:A (-1.00) BS01 HEM ? GO:0001666 ... P15447 9692983
    47094 1vrl:A (2.5) BS01 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    47095 1vrl:A (2.5) BS02 dna 3.2.2.31 GO:0000701 ... P83847 14961129
    47096 1vrl:A (2.5) BS03 CA 3.2.2.31 GO:0000701 ... P83847 14961129
    47097 1vrl:A (2.5) BS04 SF4 3.2.2.31 GO:0000701 ... P83847 14961129
    47098 1vrl:A (2.5) BS05 ADE 3.2.2.31 GO:0000701 ... P83847 14961129
    47099 1vrn:C (2.2) BS01 HEC ? GO:0005506 ... P07173 15858271
    47100 1vrn:C (2.2) BS02 HEC ? GO:0005506 ... P07173 15858271
    47101 1vrn:C (2.2) BS03 HEC ? GO:0005506 ... P07173 15858271
    47102 1vrn:C (2.2) BS04 HEC ? GO:0005506 ... P07173 15858271
    47103 1vrn:L (2.2) BS01 BCB ? GO:0009772 ... P06009 15858271
    47104 1vrn:L (2.2) BS02 BCB ? GO:0009772 ... P06009 15858271
    47105 1vrn:L (2.2) BS03 BPB ? GO:0009772 ... P06009 15858271
    47106 1vrn:L (2.2) BS04 UQ7 ? GO:0009772 ... P06009 15858271
    47107 1vrn:L (2.2) BS05 FE2 ? GO:0009772 ... P06009 15858271
    47108 1vrn:L (2.2) BS06 BCB ? GO:0009772 ... P06009 15858271
    47109 1vrn:L (2.2) BS07 BPB ? GO:0009772 ... P06009 15858271
    47110 1vrn:L (2.2) BS08 MQ9 ? GO:0009772 ... P06009 15858271
    47111 1vrn:M (2.2) BS01 BCB ? GO:0009772 ... P06010 15858271
    47112 1vrn:M (2.2) BS02 BPB ? GO:0009772 ... P06010 15858271
    47113 1vrn:M (2.2) BS03 FE2 ? GO:0009772 ... P06010 15858271
    47114 1vrn:M (2.2) BS04 BCB ? GO:0009772 ... P06010 15858271
    47115 1vrn:M (2.2) BS05 BCB ? GO:0009772 ... P06010 15858271
    47116 1vrn:M (2.2) BS06 BPB ? GO:0009772 ... P06010 15858271
    47117 1vrn:M (2.2) BS07 MQ9 ? GO:0009772 ... P06010 15858271
    47118 1vrn:M (2.2) BS08 NS5 ? GO:0009772 ... P06010 15858271
    47119 1vrp:A (2.1) BS01 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    47120 1vrp:B (2.1) BS01 NO3 2.7.3.2 GO:0003824 ... P04414 12437342
    47121 1vrp:B (2.1) BS02 ADP 2.7.3.2 GO:0003824 ... P04414 12437342
    47122 1vrp:B (2.1) BS03 IOM 2.7.3.2 GO:0003824 ... P04414 12437342
    47123 1vrq:A (2.2) BS01 NAD 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    47124 1vrq:A (2.2) BS02 FON 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    47125 1vrq:A (2.2) BS03 FMN 1.5.3.24 GO:0000166 ... Q50LF0 15946648
    47126 1vrq:B (2.2) BS01 FAD 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    47127 1vrq:B (2.2) BS02 FMN 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    47128 1vrq:B (2.2) BS03 DMG 1.5.3.24 GO:0000166 ... Q50LF2 15946648
    47129 1vrq:D (2.2) BS01 ZN 1.5.3.24 GO:0005737 ... Q50LF1 15946648
    47130 1vrr:A (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    47131 1vrr:A (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    47132 1vrr:B (2.7) BS01 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    47133 1vrr:B (2.7) BS02 dna 3.1.21.4 GO:0000287 ... Q84AF2 15893669
    47134 1vru:A (2.4) BS01 AAP 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P04585 7540934 MOAD: ic50=0.1uM
    PDBbind: -logKd/Ki=7.00, IC50=0.1uM
    47135 1vrw:A (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    47136 1vrw:B (2.4) BS01 NAI 1.3.1.9 GO:0004318 ... Q9BH77 11792710
    47137 1vs0:A (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47138 1vs0:A (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47139 1vs0:A (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47140 1vs0:B (2.4) BS01 ZN 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47141 1vs0:B (2.4) BS02 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47142 1vs0:B (2.4) BS03 CL 6.5.1.1 GO:0003910 ... P9WNV3 16476729
    47143 1vs1:A (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47144 1vs1:A (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47145 1vs1:B (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47146 1vs1:B (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47147 1vs1:C (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47148 1vs1:C (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47149 1vs1:D (2.3) BS01 MN 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47150 1vs1:D (2.3) BS02 PEP 2.5.1.54 GO:0003849 ... Q9YEJ7 N/A
    47151 1vsd:A (1.7) BS01 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 8805516
    47152 1vsf:A (2.05) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 8805516
    47153 1vsh:A (1.95) BS01 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47154 1vsh:A (1.95) BS02 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47155 1vsh:A (1.95) BS03 ZN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47156 1vsi:A (2.2) BS01 CA 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47157 1vsj:A (2.1) BS01 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47158 1vsj:A (2.1) BS02 CD 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.26.4
    3.4.23.-    		 GO:0003676 ... O92956 9218451
    47159 1vsn:A (2.0) BS01 NFT 3.4.22.38 GO:0006508 ... P43235 16413777 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    47160 1vsr:A (1.8) BS01 ZN 3.1.-.- GO:0004519 ... P09184 10360178
    47161 1vst:A (2.8) BS01 GTP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    47162 1vst:A (2.8) BS02 PRP 2.4.2.9 GO:0000287 ... Q980Q4 19683539
    47163 1vsv:A (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    47164 1vsv:B (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    47165 1vsv:C (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    47166 1vsv:D (2.0) BS01 NAD 1.2.1.12 GO:0000166 ... Q7YYQ9 19243605
    47167 1vtk:A (2.75) BS01 ADP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    47168 1vtk:A (2.75) BS02 TMP 2.7.1.21 GO:0004797 ... P0DTH5 9336833
    47169 1vtl:E (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    47170 1vtl:E (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    47171 1vtl:F (2.25) BS01 dna ? GO:0003677 ... P28147 8413605
    47172 1vtl:F (2.25) BS02 dna ? GO:0003677 ... P28147 8413605
    47173 1vtn:C (2.5) BS01 dna ? GO:0003700 ... P55318 8332212
    47174 1vtn:C (2.5) BS02 dna ? GO:0003700 ... P55318 8332212
    47175 1vtn:C (2.5) BS03 MG ? GO:0003700 ... P55318 8332212
    47176 1vto:A (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    47177 1vto:A (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    47178 1vto:B (1.9) BS01 dna ? GO:0003677 ... P28147 7634103
    47179 1vto:B (1.9) BS02 dna ? GO:0003677 ... P28147 7634103
    47180 1vvj:QB (3.44) BS01 rna ? GO:0003735 ... P80371 25128388
    47181 1vvj:QC (3.44) BS01 rna ? GO:0003676 ... P80372 25128388
    47182 1vvj:QD (3.44) BS01 rna ? GO:0003723 ... P80373 25128388
    47183 1vvj:QD (3.44) BS02 ZN ? GO:0003723 ... P80373 25128388
    47184 1vvj:QE (3.44) BS01 rna ? GO:0003723 ... Q5SHQ5 25128388
    47185 1vvj:QF (3.44) BS01 rna ? GO:0003735 ... Q5SLP8 25128388
    47186 1vvj:QF (3.44) BS02 MG ? GO:0003735 ... Q5SLP8 25128388
    47187 1vvj:QG (3.44) BS01 rna ? GO:0000028 ... P17291 25128388
    47188 1vvj:QH (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47189 1vvj:QH (3.44) BS02 MG N/A GO:0003735 ... N/A 25128388
    47190 1vvj:QI (3.44) BS01 rna ? GO:0000049 ... P80374 25128388
    47191 1vvj:QI (3.44) BS02 rna ? GO:0000049 ... P80374 25128388
    47192 1vvj:QJ (3.44) BS01 rna ? GO:0000049 ... Q5SHN7 25128388
    47193 1vvj:QK (3.44) BS01 rna ? GO:0003735 ... P80376 25128388
    47194 1vvj:QL (3.44) BS01 rna ? GO:0000049 ... Q5SHN3 25128388
    47195 1vvj:QM (3.44) BS01 rna ? GO:0000049 ... P80377 25128388
    47196 1vvj:QM (3.44) BS02 rna ? GO:0000049 ... P80377 25128388
    47197 1vvj:QM (3.44) BS03 MG ? GO:0000049 ... P80377 25128388
    47198 1vvj:QN (3.44) BS01 rna N/A GO:0003735 ... N/A 25128388
    47199 1vvj:QN (3.44) BS02 ZN N/A GO:0003735 ... N/A 25128388
    47200 1vvj:QO (3.44) BS01 rna ? GO:0003735 ... Q5SJ76 25128388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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