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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46801 1vq8:A (2.2) BS02 MG ? GO:0002181 ... P20276 16285925
    46802 1vq8:B (2.2) BS01 rna ? GO:0003723 ... P20279 16285925
    46803 1vq8:C (2.2) BS01 rna ? GO:0003723 ... P12735 16285925
    46804 1vq8:D (2.2) BS01 rna ? GO:0000049 ... P14124 16285925
    46805 1vq8:D (2.2) BS02 rna ? GO:0000049 ... P14124 16285925
    46806 1vq8:E (2.2) BS01 rna ? GO:0002181 ... P14135 16285925
    46807 1vq8:F (2.2) BS01 rna ? GO:0001682 ... P12743 16285925
    46808 1vq8:H (2.2) BS01 rna ? GO:0000027 ... P60617 16285925
    46809 1vq8:I (2.2) BS01 rna ? GO:0003735 ... P14122 16285925
    46810 1vq8:J (2.2) BS01 rna ? GO:0003729 ... P29198 16285925
    46811 1vq8:K (2.2) BS01 rna ? GO:0003735 ... P22450 16285925
    46812 1vq8:L (2.2) BS01 rna ? GO:0003735 ... P12737 16285925
    46813 1vq8:M (2.2) BS01 rna ? GO:0002181 ... P60618 16285925
    46814 1vq8:N (2.2) BS01 rna ? GO:0000027 ... P14123 16285925
    46815 1vq8:N (2.2) BS02 rna ? GO:0000027 ... P14123 16285925
    46816 1vq8:O (2.2) BS01 rna ? GO:0003723 ... P12733 16285925
    46817 1vq8:P (2.2) BS01 rna ? GO:0003723 ... P14119 16285925
    46818 1vq8:Q (2.2) BS01 rna ? GO:0003735 ... P12734 16285925
    46819 1vq8:Q (2.2) BS02 rna ? GO:0003735 ... P12734 16285925
    46820 1vq8:R (2.2) BS01 rna ? GO:0002181 ... P10970 16285925
    46821 1vq8:S (2.2) BS01 rna ? GO:0000027 ... P12732 16285925
    46822 1vq8:T (2.2) BS01 rna ? GO:0002181 ... P10972 16285925
    46823 1vq8:T (2.2) BS02 MG ? GO:0002181 ... P10972 16285925
    46824 1vq8:U (2.2) BS01 rna ? GO:0003735 ... P14116 16285925
    46825 1vq8:V (2.2) BS01 rna ? GO:0003735 ... P10971 16285925
    46826 1vq8:W (2.2) BS01 rna ? GO:0000463 ... P14121 16285925
    46827 1vq8:W (2.2) BS02 rna ? GO:0000463 ... P14121 16285925
    46828 1vq8:X (2.2) BS01 rna ? GO:0002181 ... P18138 16285925
    46829 1vq8:Y (2.2) BS01 rna ? GO:0000166 ... P12736 16285925
    46830 1vq8:Y (2.2) BS02 MG ? GO:0000166 ... P12736 16285925
    46831 1vq8:Z (2.2) BS01 rna ? GO:0003735 ... P60619 16285925
    46832 1vq9:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16285925
    46833 1vq9:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16285925
    46834 1vq9:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16285925
    46835 1vq9:A (2.4) BS01 rna ? GO:0002181 ... P20276 16285925
    46836 1vq9:A (2.4) BS02 MG ? GO:0002181 ... P20276 16285925
    46837 1vq9:B (2.4) BS01 rna ? GO:0003723 ... P20279 16285925
    46838 1vq9:C (2.4) BS01 rna ? GO:0003723 ... P12735 16285925
    46839 1vq9:D (2.4) BS01 rna ? GO:0000049 ... P14124 16285925
    46840 1vq9:D (2.4) BS02 rna ? GO:0000049 ... P14124 16285925
    46841 1vq9:E (2.4) BS01 rna ? GO:0002181 ... P14135 16285925
    46842 1vq9:F (2.4) BS01 rna ? GO:0001682 ... P12743 16285925
    46843 1vq9:H (2.4) BS01 rna ? GO:0000027 ... P60617 16285925
    46844 1vq9:H (2.4) BS02 rna ? GO:0000027 ... P60617 16285925
    46845 1vq9:I (2.4) BS01 rna ? GO:0003735 ... P14122 16285925
    46846 1vq9:J (2.4) BS01 rna ? GO:0003729 ... P29198 16285925
    46847 1vq9:K (2.4) BS01 rna ? GO:0003735 ... P22450 16285925
    46848 1vq9:L (2.4) BS01 rna ? GO:0003735 ... P12737 16285925
    46849 1vq9:M (2.4) BS01 rna ? GO:0002181 ... P60618 16285925
    46850 1vq9:N (2.4) BS01 rna ? GO:0000027 ... P14123 16285925
    46851 1vq9:N (2.4) BS02 rna ? GO:0000027 ... P14123 16285925
    46852 1vq9:O (2.4) BS01 rna ? GO:0003723 ... P12733 16285925
    46853 1vq9:P (2.4) BS01 rna ? GO:0003723 ... P14119 16285925
    46854 1vq9:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16285925
    46855 1vq9:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16285925
    46856 1vq9:R (2.4) BS01 rna ? GO:0002181 ... P10970 16285925
    46857 1vq9:S (2.4) BS01 rna ? GO:0000027 ... P12732 16285925
    46858 1vq9:T (2.4) BS01 rna ? GO:0002181 ... P10972 16285925
    46859 1vq9:T (2.4) BS02 MG ? GO:0002181 ... P10972 16285925
    46860 1vq9:U (2.4) BS01 rna ? GO:0003735 ... P14116 16285925
    46861 1vq9:V (2.4) BS01 rna ? GO:0003735 ... P10971 16285925
    46862 1vq9:W (2.4) BS01 rna ? GO:0000463 ... P14121 16285925
    46863 1vq9:W (2.4) BS02 rna ? GO:0000463 ... P14121 16285925
    46864 1vq9:X (2.4) BS01 rna ? GO:0002181 ... P18138 16285925
    46865 1vq9:Y (2.4) BS01 rna ? GO:0000166 ... P12736 16285925
    46866 1vq9:Y (2.4) BS02 MG ? GO:0000166 ... P12736 16285925
    46867 1vq9:Z (2.4) BS01 rna ? GO:0003735 ... P60619 16285925
    46868 1vqk:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    46869 1vqk:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    46870 1vqk:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    46871 1vqk:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    46872 1vqk:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    46873 1vqk:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    46874 1vqk:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    46875 1vqk:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    46876 1vqk:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    46877 1vqk:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    46878 1vqk:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    46879 1vqk:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    46880 1vqk:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    46881 1vqk:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    46882 1vqk:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    46883 1vqk:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    46884 1vqk:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    46885 1vqk:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    46886 1vqk:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    46887 1vqk:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    46888 1vqk:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    46889 1vqk:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    46890 1vqk:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    46891 1vqk:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    46892 1vqk:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    46893 1vqk:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    46894 1vqk:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    46895 1vqk:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    46896 1vqk:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    46897 1vqk:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    46898 1vqk:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    46899 1vqk:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    46900 1vqk:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    46901 1vqk:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    46902 1vqk:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    46903 1vqk:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    46904 1vql:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    46905 1vql:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    46906 1vql:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    46907 1vql:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    46908 1vql:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    46909 1vql:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    46910 1vql:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    46911 1vql:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    46912 1vql:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    46913 1vql:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    46914 1vql:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    46915 1vql:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    46916 1vql:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    46917 1vql:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    46918 1vql:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    46919 1vql:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    46920 1vql:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    46921 1vql:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    46922 1vql:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    46923 1vql:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    46924 1vql:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    46925 1vql:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    46926 1vql:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    46927 1vql:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    46928 1vql:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    46929 1vql:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    46930 1vql:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    46931 1vql:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    46932 1vql:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    46933 1vql:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    46934 1vql:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    46935 1vql:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    46936 1vql:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    46937 1vql:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    46938 1vql:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    46939 1vql:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    46940 1vqm:1 (2.3) BS01 rna ? GO:0003723 ... P32410 16285925
    46941 1vqm:2 (2.3) BS01 rna ? GO:0003735 ... P22452 16285925
    46942 1vqm:3 (2.3) BS01 rna ? GO:0000049 ... P32411 16285925
    46943 1vqm:A (2.3) BS01 rna ? GO:0002181 ... P20276 16285925
    46944 1vqm:A (2.3) BS02 MG ? GO:0002181 ... P20276 16285925
    46945 1vqm:A (2.3) BS03 MG ? GO:0002181 ... P20276 16285925
    46946 1vqm:B (2.3) BS01 rna ? GO:0003723 ... P20279 16285925
    46947 1vqm:C (2.3) BS01 rna ? GO:0003723 ... P12735 16285925
    46948 1vqm:D (2.3) BS01 rna ? GO:0000049 ... P14124 16285925
    46949 1vqm:D (2.3) BS02 rna ? GO:0000049 ... P14124 16285925
    46950 1vqm:E (2.3) BS01 rna ? GO:0002181 ... P14135 16285925
    46951 1vqm:F (2.3) BS01 rna ? GO:0001682 ... P12743 16285925
    46952 1vqm:H (2.3) BS01 rna ? GO:0000027 ... P60617 16285925
    46953 1vqm:I (2.3) BS01 rna ? GO:0003735 ... P14122 16285925
    46954 1vqm:J (2.3) BS01 rna ? GO:0003729 ... P29198 16285925
    46955 1vqm:K (2.3) BS01 rna ? GO:0003735 ... P22450 16285925
    46956 1vqm:L (2.3) BS01 rna ? GO:0003735 ... P12737 16285925
    46957 1vqm:M (2.3) BS01 rna ? GO:0002181 ... P60618 16285925
    46958 1vqm:N (2.3) BS01 rna ? GO:0000027 ... P14123 16285925
    46959 1vqm:N (2.3) BS02 rna ? GO:0000027 ... P14123 16285925
    46960 1vqm:O (2.3) BS01 rna ? GO:0003723 ... P12733 16285925
    46961 1vqm:P (2.3) BS01 rna ? GO:0003723 ... P14119 16285925
    46962 1vqm:Q (2.3) BS01 rna ? GO:0003735 ... P12734 16285925
    46963 1vqm:Q (2.3) BS02 rna ? GO:0003735 ... P12734 16285925
    46964 1vqm:R (2.3) BS01 rna ? GO:0002181 ... P10970 16285925
    46965 1vqm:S (2.3) BS01 rna ? GO:0000027 ... P12732 16285925
    46966 1vqm:T (2.3) BS01 rna ? GO:0002181 ... P10972 16285925
    46967 1vqm:T (2.3) BS02 MG ? GO:0002181 ... P10972 16285925
    46968 1vqm:U (2.3) BS01 rna ? GO:0003735 ... P14116 16285925
    46969 1vqm:V (2.3) BS01 rna ? GO:0003735 ... P10971 16285925
    46970 1vqm:W (2.3) BS01 rna ? GO:0000463 ... P14121 16285925
    46971 1vqm:W (2.3) BS02 rna ? GO:0000463 ... P14121 16285925
    46972 1vqm:X (2.3) BS01 rna ? GO:0002181 ... P18138 16285925
    46973 1vqm:Y (2.3) BS01 rna ? GO:0000166 ... P12736 16285925
    46974 1vqm:Y (2.3) BS02 MG ? GO:0000166 ... P12736 16285925
    46975 1vqm:Z (2.3) BS01 rna ? GO:0003735 ... P60619 16285925
    46976 1vqn:1 (2.4) BS01 rna ? GO:0003723 ... P32410 16306996
    46977 1vqn:2 (2.4) BS01 rna ? GO:0003735 ... P22452 16306996
    46978 1vqn:3 (2.4) BS01 rna ? GO:0000049 ... P32411 16306996
    46979 1vqn:A (2.4) BS01 rna ? GO:0002181 ... P20276 16306996
    46980 1vqn:A (2.4) BS02 MG ? GO:0002181 ... P20276 16306996
    46981 1vqn:A (2.4) BS03 MG ? GO:0002181 ... P20276 16306996
    46982 1vqn:B (2.4) BS01 rna ? GO:0003723 ... P20279 16306996
    46983 1vqn:C (2.4) BS01 rna ? GO:0003723 ... P12735 16306996
    46984 1vqn:D (2.4) BS01 rna ? GO:0000049 ... P14124 16306996
    46985 1vqn:D (2.4) BS02 rna ? GO:0000049 ... P14124 16306996
    46986 1vqn:E (2.4) BS01 rna ? GO:0002181 ... P14135 16306996
    46987 1vqn:F (2.4) BS01 rna ? GO:0001682 ... P12743 16306996
    46988 1vqn:H (2.4) BS01 rna ? GO:0000027 ... P60617 16306996
    46989 1vqn:I (2.4) BS01 rna ? GO:0003735 ... P14122 16306996
    46990 1vqn:J (2.4) BS01 rna ? GO:0003729 ... P29198 16306996
    46991 1vqn:K (2.4) BS01 rna ? GO:0003735 ... P22450 16306996
    46992 1vqn:L (2.4) BS01 rna ? GO:0003735 ... P12737 16306996
    46993 1vqn:M (2.4) BS01 rna ? GO:0002181 ... P60618 16306996
    46994 1vqn:N (2.4) BS01 rna ? GO:0000027 ... P14123 16306996
    46995 1vqn:N (2.4) BS02 rna ? GO:0000027 ... P14123 16306996
    46996 1vqn:O (2.4) BS01 rna ? GO:0003723 ... P12733 16306996
    46997 1vqn:P (2.4) BS01 rna ? GO:0003723 ... P14119 16306996
    46998 1vqn:Q (2.4) BS01 rna ? GO:0003735 ... P12734 16306996
    46999 1vqn:Q (2.4) BS02 rna ? GO:0003735 ... P12734 16306996
    47000 1vqn:R (2.4) BS01 rna ? GO:0002181 ... P10970 16306996
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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