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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46601 1vln:F (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    46602 1vln:F (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    46603 1vln:G (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    46604 1vln:G (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    46605 1vln:H (2.4) BS01 MN ? GO:0005537 ... P08902 8812975
    46606 1vln:H (2.4) BS02 CA ? GO:0005537 ... P08902 8812975
    46607 1vlt:A (2.2) BS01 ASP ? GO:0006935 ... P02941 8831788
    46608 1vlt:A (2.2) BS02 ASP ? GO:0006935 ... P02941 8831788
    46609 1vlt:B (2.2) BS01 ASP ? GO:0006935 ... P02941 8831788
    46610 1vlt:B (2.2) BS02 ASP ? GO:0006935 ... P02941 8831788
    46611 1vm1:A (2.02) BS01 MA4 3.5.2.6 GO:0008800 ... P0AD64 11327849
    46612 1vm1:A (2.02) BS02 TBE 3.5.2.6 GO:0008800 ... P0AD64 11327849
    46613 1vm1:A (2.02) BS03 TAZ 3.5.2.6 GO:0008800 ... P0AD64 11327849 BindingDB: Ki=2.2e+2nM, IC50=222nM
    46614 1vm6:A (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    46615 1vm6:B (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    46616 1vm6:C (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    46617 1vm6:D (2.27) BS01 NAD 1.17.1.8 GO:0005737 ... Q9X1K8 N/A
    46618 1vm9:A (1.48) BS01 MG ? GO:0009056 ... Q00458 16627939
    46619 1vm9:A (1.48) BS02 FES ? GO:0009056 ... Q00458 16627939
    46620 1vnc:A (2.1) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 8552646
    46621 1vnc:A (2.1) BS02 AZI 1.11.1.10 GO:0004601 ... P49053 8552646
    46622 1vne:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46623 1vnf:A (2.35) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46624 1vng:A (2.2) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46625 1vnh:A (2.11) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46626 1vni:A (2.15) BS01 VO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46627 1vns:A (1.66) BS01 SO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46628 1vns:A (1.66) BS02 SO4 1.11.1.10 GO:0004601 ... P49053 10499093
    46629 1vol:A (2.7) BS01 dna 2.3.1.48 GO:0006352 ... Q00403 7675079
    46630 1vol:A (2.7) BS02 dna 2.3.1.48 GO:0006352 ... Q00403 7675079
    46631 1vol:B (2.7) BS01 dna ? GO:0003677 ... P28147 7675079
    46632 1vol:B (2.7) BS02 dna ? GO:0003677 ... P28147 7675079
    46633 1vot:A (2.5) BS01 HUP 3.1.1.7 GO:0001507 ... P04058 8989325 MOAD: Ki=250nM
    PDBbind: -logKd/Ki=6.60, Ki=250nM
    BindingDB: IC50=11.4nM
    46634 1vp3:A (1.9) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    46635 1vp4:A (1.82) BS01 PLP ? GO:0008483 ... Q9X0L5 N/A
    46636 1vp4:B (1.82) BS01 PLP ? GO:0008483 ... Q9X0L5 N/A
    46637 1vp9:A (1.95) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    46638 1vpa:A (2.67) BS01 CTP 2.7.7.60 GO:0003824 ... Q9X1B3 N/A
    46639 1vpa:B (2.67) BS01 CTP 2.7.7.60 GO:0003824 ... Q9X1B3 N/A
    46640 1vpe:A (2.0) BS01 ANP 2.7.2.3
    5.3.1.1    		 GO:0004618 ... P36204 9384563
    46641 1vpm:A (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    46642 1vpm:B (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    46643 1vpm:C (1.66) BS01 COA 3.1.2.- GO:0005829 ... Q9KEQ1 N/A
    46644 1vpt:A (1.8) BS01 SAM 2.1.1.57 GO:0003723 ... P07617 8612277
    46645 1vpw:A (2.7) BS01 dna ? GO:0000976 ... P0ACP7 9628480
    46646 1vpw:A (2.7) BS02 HPA ? GO:0000976 ... P0ACP7 9628480
    46647 1vq0:A (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    46648 1vq0:B (2.2) BS01 ZN ? GO:0005737 ... Q9X1B4 16167343
    46649 1vq1:A (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    46650 1vq1:B (2.8) BS01 SAM 2.1.1.297 GO:0003676 ... Q9WYV8 N/A
    46651 1vq2:A (2.2) BS01 ZN 3.5.4.12 GO:0003824 ... P16006 15504034
    46652 1vq2:A (2.2) BS02 ZN 3.5.4.12 GO:0003824 ... P16006 15504034
    46653 1vq2:A (2.2) BS03 DDN 3.5.4.12 GO:0003824 ... P16006 15504034
    46654 1vq4:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16285925
    46655 1vq4:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16285925
    46656 1vq4:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16285925
    46657 1vq4:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16285925
    46658 1vq4:A (2.7) BS01 rna ? GO:0002181 ... P20276 16285925
    46659 1vq4:A (2.7) BS02 MG ? GO:0002181 ... P20276 16285925
    46660 1vq4:B (2.7) BS01 rna ? GO:0003723 ... P20279 16285925
    46661 1vq4:C (2.7) BS01 rna ? GO:0003723 ... P12735 16285925
    46662 1vq4:D (2.7) BS01 rna ? GO:0000049 ... P14124 16285925
    46663 1vq4:D (2.7) BS02 rna ? GO:0000049 ... P14124 16285925
    46664 1vq4:E (2.7) BS01 rna ? GO:0002181 ... P14135 16285925
    46665 1vq4:F (2.7) BS01 rna ? GO:0001682 ... P12743 16285925
    46666 1vq4:H (2.7) BS01 rna ? GO:0000027 ... P60617 16285925
    46667 1vq4:I (2.7) BS01 rna ? GO:0003735 ... P14122 16285925
    46668 1vq4:J (2.7) BS01 rna ? GO:0003729 ... P29198 16285925
    46669 1vq4:K (2.7) BS01 rna ? GO:0003735 ... P22450 16285925
    46670 1vq4:L (2.7) BS01 rna ? GO:0003735 ... P12737 16285925
    46671 1vq4:M (2.7) BS01 rna ? GO:0002181 ... P60618 16285925
    46672 1vq4:N (2.7) BS01 rna ? GO:0000027 ... P14123 16285925
    46673 1vq4:N (2.7) BS02 rna ? GO:0000027 ... P14123 16285925
    46674 1vq4:O (2.7) BS01 rna ? GO:0003723 ... P12733 16285925
    46675 1vq4:P (2.7) BS01 rna ? GO:0003723 ... P14119 16285925
    46676 1vq4:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16285925
    46677 1vq4:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16285925
    46678 1vq4:R (2.7) BS01 rna ? GO:0002181 ... P10970 16285925
    46679 1vq4:S (2.7) BS01 rna ? GO:0000027 ... P12732 16285925
    46680 1vq4:T (2.7) BS01 rna ? GO:0002181 ... P10972 16285925
    46681 1vq4:T (2.7) BS02 MG ? GO:0002181 ... P10972 16285925
    46682 1vq4:U (2.7) BS01 rna ? GO:0003735 ... P14116 16285925
    46683 1vq4:V (2.7) BS01 rna ? GO:0003735 ... P10971 16285925
    46684 1vq4:W (2.7) BS01 rna ? GO:0000463 ... P14121 16285925
    46685 1vq4:W (2.7) BS02 rna ? GO:0000463 ... P14121 16285925
    46686 1vq4:X (2.7) BS01 rna ? GO:0002181 ... P18138 16285925
    46687 1vq4:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16285925
    46688 1vq4:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16285925
    46689 1vq4:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16285925
    46690 1vq5:1 (2.6) BS01 rna ? GO:0003723 ... P32410 16285925
    46691 1vq5:2 (2.6) BS01 rna ? GO:0003735 ... P22452 16285925
    46692 1vq5:3 (2.6) BS01 rna ? GO:0000049 ... P32411 16285925
    46693 1vq5:3 (2.6) BS02 MG ? GO:0000049 ... P32411 16285925
    46694 1vq5:A (2.6) BS01 rna ? GO:0002181 ... P20276 16285925
    46695 1vq5:A (2.6) BS02 MG ? GO:0002181 ... P20276 16285925
    46696 1vq5:B (2.6) BS01 rna ? GO:0003723 ... P20279 16285925
    46697 1vq5:C (2.6) BS01 rna ? GO:0003723 ... P12735 16285925
    46698 1vq5:D (2.6) BS01 rna ? GO:0000049 ... P14124 16285925
    46699 1vq5:D (2.6) BS02 rna ? GO:0000049 ... P14124 16285925
    46700 1vq5:E (2.6) BS01 rna ? GO:0002181 ... P14135 16285925
    46701 1vq5:F (2.6) BS01 rna ? GO:0001682 ... P12743 16285925
    46702 1vq5:H (2.6) BS01 rna ? GO:0000027 ... P60617 16285925
    46703 1vq5:I (2.6) BS01 rna ? GO:0003735 ... P14122 16285925
    46704 1vq5:J (2.6) BS01 rna ? GO:0003729 ... P29198 16285925
    46705 1vq5:K (2.6) BS01 rna ? GO:0003735 ... P22450 16285925
    46706 1vq5:L (2.6) BS01 rna ? GO:0003735 ... P12737 16285925
    46707 1vq5:M (2.6) BS01 rna ? GO:0002181 ... P60618 16285925
    46708 1vq5:N (2.6) BS01 rna ? GO:0000027 ... P14123 16285925
    46709 1vq5:N (2.6) BS02 rna ? GO:0000027 ... P14123 16285925
    46710 1vq5:O (2.6) BS01 rna ? GO:0003723 ... P12733 16285925
    46711 1vq5:P (2.6) BS01 rna ? GO:0003723 ... P14119 16285925
    46712 1vq5:Q (2.6) BS01 rna ? GO:0003735 ... P12734 16285925
    46713 1vq5:Q (2.6) BS02 rna ? GO:0003735 ... P12734 16285925
    46714 1vq5:R (2.6) BS01 rna ? GO:0002181 ... P10970 16285925
    46715 1vq5:S (2.6) BS01 rna ? GO:0000027 ... P12732 16285925
    46716 1vq5:T (2.6) BS01 rna ? GO:0002181 ... P10972 16285925
    46717 1vq5:T (2.6) BS02 MG ? GO:0002181 ... P10972 16285925
    46718 1vq5:U (2.6) BS01 rna ? GO:0003735 ... P14116 16285925
    46719 1vq5:V (2.6) BS01 rna ? GO:0003735 ... P10971 16285925
    46720 1vq5:W (2.6) BS01 rna ? GO:0000463 ... P14121 16285925
    46721 1vq5:W (2.6) BS02 rna ? GO:0000463 ... P14121 16285925
    46722 1vq5:X (2.6) BS01 rna ? GO:0002181 ... P18138 16285925
    46723 1vq5:Y (2.6) BS01 rna ? GO:0000166 ... P12736 16285925
    46724 1vq5:Y (2.6) BS02 MG ? GO:0000166 ... P12736 16285925
    46725 1vq5:Z (2.6) BS01 rna ? GO:0003735 ... P60619 16285925
    46726 1vq6:1 (2.7) BS01 rna ? GO:0003723 ... P32410 16306996
    46727 1vq6:2 (2.7) BS01 rna ? GO:0003735 ... P22452 16306996
    46728 1vq6:3 (2.7) BS01 rna ? GO:0000049 ... P32411 16306996
    46729 1vq6:3 (2.7) BS02 MG ? GO:0000049 ... P32411 16306996
    46730 1vq6:A (2.7) BS01 rna ? GO:0002181 ... P20276 16306996
    46731 1vq6:A (2.7) BS02 MG ? GO:0002181 ... P20276 16306996
    46732 1vq6:B (2.7) BS01 rna ? GO:0003723 ... P20279 16306996
    46733 1vq6:C (2.7) BS01 rna ? GO:0003723 ... P12735 16306996
    46734 1vq6:D (2.7) BS01 rna ? GO:0000049 ... P14124 16306996
    46735 1vq6:D (2.7) BS02 rna ? GO:0000049 ... P14124 16306996
    46736 1vq6:E (2.7) BS01 rna ? GO:0002181 ... P14135 16306996
    46737 1vq6:F (2.7) BS01 rna ? GO:0001682 ... P12743 16306996
    46738 1vq6:H (2.7) BS01 rna ? GO:0000027 ... P60617 16306996
    46739 1vq6:I (2.7) BS01 rna ? GO:0003735 ... P14122 16306996
    46740 1vq6:J (2.7) BS01 rna ? GO:0003729 ... P29198 16306996
    46741 1vq6:K (2.7) BS01 rna ? GO:0003735 ... P22450 16306996
    46742 1vq6:L (2.7) BS01 rna ? GO:0003735 ... P12737 16306996
    46743 1vq6:M (2.7) BS01 rna ? GO:0002181 ... P60618 16306996
    46744 1vq6:N (2.7) BS01 rna ? GO:0000027 ... P14123 16306996
    46745 1vq6:N (2.7) BS02 rna ? GO:0000027 ... P14123 16306996
    46746 1vq6:O (2.7) BS01 rna ? GO:0003723 ... P12733 16306996
    46747 1vq6:P (2.7) BS01 rna ? GO:0003723 ... P14119 16306996
    46748 1vq6:Q (2.7) BS01 rna ? GO:0003735 ... P12734 16306996
    46749 1vq6:Q (2.7) BS02 rna ? GO:0003735 ... P12734 16306996
    46750 1vq6:R (2.7) BS01 rna ? GO:0002181 ... P10970 16306996
    46751 1vq6:S (2.7) BS01 rna ? GO:0000027 ... P12732 16306996
    46752 1vq6:T (2.7) BS01 rna ? GO:0002181 ... P10972 16306996
    46753 1vq6:T (2.7) BS02 MG ? GO:0002181 ... P10972 16306996
    46754 1vq6:U (2.7) BS01 rna ? GO:0003735 ... P14116 16306996
    46755 1vq6:V (2.7) BS01 rna ? GO:0003735 ... P10971 16306996
    46756 1vq6:W (2.7) BS01 rna ? GO:0000463 ... P14121 16306996
    46757 1vq6:W (2.7) BS02 rna ? GO:0000463 ... P14121 16306996
    46758 1vq6:X (2.7) BS01 rna ? GO:0002181 ... P18138 16306996
    46759 1vq6:Y (2.7) BS01 rna ? GO:0000166 ... P12736 16306996
    46760 1vq6:Y (2.7) BS02 MG ? GO:0000166 ... P12736 16306996
    46761 1vq6:Z (2.7) BS01 rna ? GO:0003735 ... P60619 16306996
    46762 1vq7:1 (2.5) BS01 rna ? GO:0003723 ... P32410 16306996
    46763 1vq7:2 (2.5) BS01 rna ? GO:0003735 ... P22452 16306996
    46764 1vq7:3 (2.5) BS01 rna ? GO:0000049 ... P32411 16306996
    46765 1vq7:3 (2.5) BS02 MG ? GO:0000049 ... P32411 16306996
    46766 1vq7:A (2.5) BS01 rna ? GO:0002181 ... P20276 16306996
    46767 1vq7:B (2.5) BS01 rna ? GO:0003723 ... P20279 16306996
    46768 1vq7:C (2.5) BS01 rna ? GO:0003723 ... P12735 16306996
    46769 1vq7:D (2.5) BS01 rna ? GO:0000049 ... P14124 16306996
    46770 1vq7:D (2.5) BS02 rna ? GO:0000049 ... P14124 16306996
    46771 1vq7:E (2.5) BS01 rna ? GO:0002181 ... P14135 16306996
    46772 1vq7:F (2.5) BS01 rna ? GO:0001682 ... P12743 16306996
    46773 1vq7:H (2.5) BS01 rna ? GO:0000027 ... P60617 16306996
    46774 1vq7:I (2.5) BS01 rna ? GO:0003735 ... P14122 16306996
    46775 1vq7:J (2.5) BS01 rna ? GO:0003729 ... P29198 16306996
    46776 1vq7:K (2.5) BS01 rna ? GO:0003735 ... P22450 16306996
    46777 1vq7:L (2.5) BS01 rna ? GO:0003735 ... P12737 16306996
    46778 1vq7:M (2.5) BS01 rna ? GO:0002181 ... P60618 16306996
    46779 1vq7:N (2.5) BS01 rna ? GO:0000027 ... P14123 16306996
    46780 1vq7:N (2.5) BS02 rna ? GO:0000027 ... P14123 16306996
    46781 1vq7:O (2.5) BS01 rna ? GO:0003723 ... P12733 16306996
    46782 1vq7:P (2.5) BS01 rna ? GO:0003723 ... P14119 16306996
    46783 1vq7:Q (2.5) BS01 rna ? GO:0003735 ... P12734 16306996
    46784 1vq7:Q (2.5) BS02 rna ? GO:0003735 ... P12734 16306996
    46785 1vq7:R (2.5) BS01 rna ? GO:0002181 ... P10970 16306996
    46786 1vq7:S (2.5) BS01 rna ? GO:0000027 ... P12732 16306996
    46787 1vq7:T (2.5) BS01 rna ? GO:0002181 ... P10972 16306996
    46788 1vq7:T (2.5) BS02 MG ? GO:0002181 ... P10972 16306996
    46789 1vq7:U (2.5) BS01 rna ? GO:0003735 ... P14116 16306996
    46790 1vq7:V (2.5) BS01 rna ? GO:0003735 ... P10971 16306996
    46791 1vq7:W (2.5) BS01 rna ? GO:0000463 ... P14121 16306996
    46792 1vq7:W (2.5) BS02 rna ? GO:0000463 ... P14121 16306996
    46793 1vq7:X (2.5) BS01 rna ? GO:0002181 ... P18138 16306996
    46794 1vq7:Y (2.5) BS01 rna ? GO:0000166 ... P12736 16306996
    46795 1vq7:Y (2.5) BS02 MG ? GO:0000166 ... P12736 16306996
    46796 1vq7:Z (2.5) BS01 rna ? GO:0003735 ... P60619 16306996
    46797 1vq8:1 (2.2) BS01 rna ? GO:0003723 ... P32410 16285925
    46798 1vq8:2 (2.2) BS01 rna ? GO:0003735 ... P22452 16285925
    46799 1vq8:3 (2.2) BS01 rna ? GO:0000049 ... P32411 16285925
    46800 1vq8:A (2.2) BS01 rna ? GO:0002181 ... P20276 16285925
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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