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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    33001 1p7t:A (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    33002 1p7t:A (1.95) BS02 ACO 2.3.3.9 GO:0000287 ... P37330 12930982
    33003 1p7t:A (1.95) BS03 PYR 2.3.3.9 GO:0000287 ... P37330 12930982 MOAD: Ki=1mM
    33004 1p7t:B (1.95) BS01 MG 2.3.3.9 GO:0000287 ... P37330 12930982
    33005 1p7t:B (1.95) BS02 ACO 2.3.3.9 GO:0000287 ... P37330 12930982
    33006 1p7t:B (1.95) BS03 PYR 2.3.3.9 GO:0000287 ... P37330 12930982 MOAD: Ki=1mM
    33007 1p7v:A (1.08) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    33008 1p7v:A (1.08) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    33009 1p7w:A (1.02) BS01 peptide 3.4.21.64 GO:0004252 ... P06873 N/A
    33010 1p7w:A (1.02) BS02 CA 3.4.21.64 GO:0004252 ... P06873 N/A
    33011 1p7y:A (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33012 1p7y:B (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33013 1p7y:C (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33014 1p7y:D (2.4) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33015 1p7z:A (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33016 1p7z:B (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33017 1p7z:C (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33018 1p7z:D (2.21) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33019 1p80:A (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33020 1p80:B (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33021 1p80:C (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33022 1p80:D (1.65) BS01 HEM 1.11.1.6 GO:0004096 ... P21179 12777389
    33023 1p81:A (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    33024 1p81:B (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    33025 1p81:C (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    33026 1p81:D (1.81) BS01 HDD 1.11.1.6 GO:0004096 ... P21179 12777389
    33027 1p84:C (2.5) BS01 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    33028 1p84:C (2.5) BS02 HEC 7.1.1.8 GO:0005739 ... P00163 12782631
    33029 1p84:C (2.5) BS03 DBT 7.1.1.8 GO:0005739 ... P00163 12782631
    33030 1p84:C (2.5) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 12782631
    33031 1p8d:A (2.8) BS01 peptide ? GO:0003677 ... P55055 12736258
    33032 1p8d:A (2.8) BS02 CO1 ? GO:0003677 ... P55055 12736258 BindingDB: EC50=286nM
    33033 1p8d:B (2.8) BS01 peptide ? GO:0003677 ... P55055 12736258
    33034 1p8d:B (2.8) BS02 CO1 ? GO:0003677 ... P55055 12736258 BindingDB: EC50=286nM
    33035 1p8h:A (1.52) BS01 RET ? GO:0005216 ... P02945 12842471
    33036 1p8i:A (1.86) BS01 RET ? GO:0005216 ... P02945 12842471
    33037 1p8j:A (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33038 1p8j:A (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33039 1p8j:A (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33040 1p8j:A (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33041 1p8j:B (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33042 1p8j:B (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33043 1p8j:B (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33044 1p8j:B (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33045 1p8j:C (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33046 1p8j:C (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33047 1p8j:C (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33048 1p8j:C (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33049 1p8j:D (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33050 1p8j:D (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33051 1p8j:D (2.6) BS03 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33052 1p8j:D (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33053 1p8j:D (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33054 1p8j:E (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33055 1p8j:E (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33056 1p8j:E (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33057 1p8j:E (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33058 1p8j:F (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33059 1p8j:F (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33060 1p8j:F (2.6) BS03 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33061 1p8j:F (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33062 1p8j:F (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33063 1p8j:G (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33064 1p8j:G (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33065 1p8j:G (2.6) BS03 FUC 3.4.21.75 GO:0004252 ... P23188 12794637
    33066 1p8j:G (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33067 1p8j:G (2.6) BS05 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33068 1p8j:H (2.6) BS01 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33069 1p8j:H (2.6) BS02 peptide 3.4.21.75 GO:0004252 ... P23188 12794637
    33070 1p8j:H (2.6) BS03 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33071 1p8j:H (2.6) BS04 CA 3.4.21.75 GO:0004252 ... P23188 12794637
    33072 1p8l:A (2.95) BS01 AMP ? GO:0000166 ... O41026 12930960
    33073 1p8m:A (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33074 1p8m:A (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33075 1p8m:B (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33076 1p8m:B (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33077 1p8m:C (2.84) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33078 1p8m:C (2.84) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33079 1p8n:A (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33080 1p8n:B (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33081 1p8n:C (2.9) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33082 1p8o:A (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33083 1p8o:A (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33084 1p8o:B (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33085 1p8o:B (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33086 1p8o:C (2.96) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33087 1p8o:C (2.96) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33088 1p8p:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33089 1p8p:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33090 1p8p:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33091 1p8p:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33092 1p8p:C (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33093 1p8p:C (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33094 1p8q:A (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33095 1p8q:A (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33096 1p8q:B (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33097 1p8q:B (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33098 1p8q:C (2.95) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33099 1p8q:C (2.95) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33100 1p8r:A (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33101 1p8r:A (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33102 1p8r:A (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    33103 1p8r:B (2.5) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33104 1p8r:B (2.5) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33105 1p8r:B (2.5) BS03 S2C 3.5.3.1 GO:0000050 ... P07824 12820884
    33106 1p8s:A (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33107 1p8s:A (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33108 1p8s:B (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33109 1p8s:B (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33110 1p8s:C (3.2) BS01 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33111 1p8s:C (3.2) BS02 MN 3.5.3.1 GO:0000050 ... P07824 12820884
    33112 1p8u:A (1.62) BS01 RET ? GO:0005216 ... P02945 12842471
    33113 1p8v:C (2.6) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12855811
    33114 1p8v:C (2.6) BS02 DFP 3.4.21.5 GO:0004252 ... P00734 12855811
    33115 1p8z:A (2.6) BS01 ATP 3.6.4.- GO:0000287 ... P68135 14527665
    33116 1p91:A (2.8) BS01 ZN 2.1.1.187 GO:0006364 ... P36999 14999102
    33117 1p91:A (2.8) BS02 SAM 2.1.1.187 GO:0006364 ... P36999 14999102
    33118 1p91:B (2.8) BS01 ZN 2.1.1.187 GO:0006364 ... P36999 14999102
    33119 1p91:B (2.8) BS02 SAM 2.1.1.187 GO:0006364 ... P36999 14999102
    33120 1p9b:A (2.0) BS01 MG 6.3.4.4 GO:0000166 ... Q9U8D3 14729341
    33121 1p9b:A (2.0) BS02 IMO 6.3.4.4 GO:0000166 ... Q9U8D3 14729341
    33122 1p9b:A (2.0) BS03 HDA 6.3.4.4 GO:0000166 ... Q9U8D3 14729341
    33123 1p9b:A (2.0) BS04 GDP 6.3.4.4 GO:0000166 ... Q9U8D3 14729341
    33124 1p9l:A (2.3) BS01 NAI 1.17.1.8 GO:0005737 ... P9WP23 12962488
    33125 1p9l:A (2.3) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    33126 1p9l:B (2.3) BS01 NAI 1.17.1.8 GO:0005737 ... P9WP23 12962488
    33127 1p9l:B (2.3) BS02 PDC 1.17.1.8 GO:0005737 ... P9WP23 12962488
    33128 1p9p:A (2.5) BS01 SAH 2.1.1.228 GO:0000287 ... P0A873 14583191 MOAD: Kd=68nM
    33129 1p9r:A (2.5) BS01 ZN 7.4.2.8 GO:0005524 ... P37093 14556751
    33130 1p9u:B (2.37) BS01 peptide 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6Y5 12746549
    33131 1p9u:F (2.37) BS01 peptide 2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0C6Y5 12746549
    33132 1p9w:A (2.7) BS01 ZN 7.4.2.8 GO:0005524 ... P37093 14556751
    33133 1p9w:A (2.7) BS02 ANP 7.4.2.8 GO:0005524 ... P37093 14556751
    33134 1pa2:A (1.45) BS01 CA 1.11.1.7 GO:0002215 ... Q42578 11117266
    33135 1pa2:A (1.45) BS02 CA 1.11.1.7 GO:0002215 ... Q42578 11117266
    33136 1pa2:A (1.45) BS03 HEM 1.11.1.7 GO:0002215 ... Q42578 11117266
    33137 1pa6:A (2.45) BS01 dna ? GO:0000723 ... P29549 12912928
    33138 1pa6:A (2.45) BS02 dna ? GO:0000723 ... P29549 12912928
    33139 1pa9:A (2.0) BS01 CSN 3.1.3.48 GO:0004725 ... P15273 12810712 MOAD: Ki=25uM
    PDBbind: -logKd/Ki=4.60, Ki=25uM
    33140 1pad:A (2.8) BS01 peptide 3.4.22.2 GO:0006508 ... P00784 952885
    33141 1pae:X (2.7) BS01 SE 2.7.4.6 GO:0004550 ... P22887 14604526
    33142 1pae:X (2.7) BS02 SE 2.7.4.6 GO:0004550 ... P22887 14604526
    33143 1pag:A (2.8) BS01 FMP 3.2.2.22 GO:0016787 ... P10297 8411176
    33144 1pag:B (2.8) BS01 FMP 3.2.2.22 GO:0016787 ... P10297 8411176
    33145 1pah:A (2.0) BS01 FE 1.14.16.1 GO:0004497 ... P00439 9406548
    33146 1pam:A (1.8) BS01 CA 2.4.1.19 GO:0003824 ... P05618 15299574
    33147 1pam:A (1.8) BS02 CA 2.4.1.19 GO:0003824 ... P05618 15299574
    33148 1pam:B (1.8) BS01 CA 2.4.1.19 GO:0003824 ... P05618 15299574
    33149 1pam:B (1.8) BS02 CA 2.4.1.19 GO:0003824 ... P05618 15299574
    33150 1par:A (2.6) BS01 dna ? GO:0003677 ... P03050 8107872
    33151 1par:A (2.6) BS02 dna ? GO:0003677 ... P03050 8107872
    33152 1par:B (2.6) BS01 dna ? GO:0003677 ... P03050 8107872
    33153 1par:B (2.6) BS02 dna ? GO:0003677 ... P03050 8107872
    33154 1par:C (2.6) BS01 dna ? GO:0003677 ... P03050 8107872
    33155 1par:C (2.6) BS02 dna ? GO:0003677 ... P03050 8107872
    33156 1par:D (2.6) BS01 dna ? GO:0003677 ... P03050 8107872
    33157 1par:D (2.6) BS02 dna ? GO:0003677 ... P03050 8107872
    33158 1pau:A (2.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 8673606
    33159 1pau:B (2.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 8673606
    33160 1pb0:A (1.95) BS01 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33161 1pb0:A (1.95) BS02 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33162 1pb0:A (1.95) BS03 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33163 1pb0:B (1.95) BS01 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33164 1pb0:B (1.95) BS02 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33165 1pb0:B (1.95) BS03 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33166 1pb0:C (1.95) BS01 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33167 1pb0:C (1.95) BS02 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33168 1pb0:C (1.95) BS03 ZN 3.1.3.- GO:0003824 ... P75914 N/A
    33169 1pbb:A (2.5) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 7520279
    33170 1pbb:A (2.5) BS02 DOB 1.14.13.2 GO:0004497 ... P00438 7520279
    33171 1pbc:A (2.8) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 7520279
    33172 1pbc:A (2.8) BS02 BHA 1.14.13.2 GO:0004497 ... P00438 7520279
    33173 1pbd:A (2.3) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 7520279
    33174 1pbd:A (2.3) BS02 PAB 1.14.13.2 GO:0004497 ... P00438 7520279
    33175 1pbe:A (1.9) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 2553983
    33176 1pbf:A (2.7) BS01 FAD 1.14.13.2 GO:0004497 ... P00438 7520279
    33177 1pbf:A (2.7) BS02 BHA 1.14.13.2 GO:0004497 ... P00438 7520279
    33178 1pbo:A (2.2) BS01 SES ? GO:0005549 ... P07435 8901871
    33179 1pbo:B (2.2) BS01 SES ? GO:0005549 ... P07435 8901871
    33180 1pbp:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 7929197
    33181 1pbx:A (2.5) BS01 HEM ? GO:0004601 ... P80043 1560461
    33182 1pbx:B (2.5) BS01 HEM ? GO:0004601 ... P80044 1560461
    33183 1pc3:A (2.16) BS01 PO4 ? GO:0005515 ... P9WGU1 12842040
    33184 1pc3:B (2.16) BS01 PO4 ? GO:0005515 ... P9WGU1 12842040
    33185 1pca:A (2.0) BS01 ZN 3.4.17.1 GO:0004181 ... P09954 1548696
    33186 1pca:A (2.0) BS02 VAL 3.4.17.1 GO:0004181 ... P09954 1548696
    33187 1pcj:X (2.0) BS01 M1P 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 14725765
    33188 1pcj:X (2.0) BS02 ZN 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 14725765
    33189 1pck:A (1.8) BS01 PEZ 2.5.1.55 GO:0005737 ... O66496 14675946
    33190 1pck:B (1.8) BS01 PEZ 2.5.1.55 GO:0005737 ... O66496 14675946
    33191 1pcm:X (1.9) BS01 ZN 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 14725765
    33192 1pcm:X (1.9) BS02 M6P 5.4.2.2
    5.4.2.8
    GO:0000287 ... P26276 14725765
    33193 1pcq:A (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33194 1pcq:A (2.808) BS02 AF3 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33195 1pcq:B (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33196 1pcq:B (2.808) BS02 AF3 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33197 1pcq:C (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33198 1pcq:C (2.808) BS02 AF3 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33199 1pcq:D (2.808) BS01 ADP 5.6.1.7 GO:0000287 ... P0A6F5 14517228
    33200 1pcq:D (2.808) BS02 AF3 5.6.1.7 GO:0000287 ... P0A6F5 14517228

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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