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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    32001 1os0:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    32002 1os0:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P00800 12832763
    32003 1os0:A (2.1) BS06 0PQ 3.4.24.27 GO:0004222 ... P00800 12832763 MOAD: Ki=0.93uM
    PDBbind: -logKd/Ki=6.03, Ki=0.93uM
    32004 1os1:A (1.8) BS01 CA 4.1.1.49 GO:0000287 ... P22259 12837799
    32005 1os1:A (1.8) BS02 ATP 4.1.1.49 GO:0000287 ... P22259 12837799
    32006 1os1:A (1.8) BS03 PYR 4.1.1.49 GO:0000287 ... P22259 12837799
    32007 1os2:A (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32008 1os2:A (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32009 1os2:A (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32010 1os2:A (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32011 1os2:A (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32012 1os2:B (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32013 1os2:B (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32014 1os2:B (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32015 1os2:B (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32016 1os2:B (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32017 1os2:C (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32018 1os2:C (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32019 1os2:C (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32020 1os2:C (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32021 1os2:C (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32022 1os2:C (2.15) BS06 AZI 3.4.24.65 GO:0004222 ... P39900 12813751
    32023 1os2:D (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32024 1os2:D (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32025 1os2:D (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32026 1os2:D (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32027 1os2:D (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32028 1os2:E (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32029 1os2:E (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32030 1os2:E (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32031 1os2:E (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32032 1os2:E (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32033 1os2:F (2.15) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32034 1os2:F (2.15) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32035 1os2:F (2.15) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32036 1os2:F (2.15) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32037 1os2:F (2.15) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32038 1os5:A (2.2) BS01 NH1 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0003723 ... P26663 12805457 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    32039 1os7:A (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    32040 1os7:A (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    32041 1os7:B (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    32042 1os7:B (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    32043 1os7:C (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    32044 1os7:C (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    32045 1os7:D (2.5) BS01 FE2 1.14.11.17 GO:0000908 ... P37610 12741810
    32046 1os7:D (2.5) BS02 AKG 1.14.11.17 GO:0000908 ... P37610 12741810
    32047 1os8:A (1.55) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    32048 1os9:A (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32049 1os9:A (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32050 1os9:A (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32051 1os9:A (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32052 1os9:A (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32053 1os9:B (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32054 1os9:B (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32055 1os9:B (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32056 1os9:B (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32057 1os9:B (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32058 1os9:C (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32059 1os9:C (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32060 1os9:C (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32061 1os9:C (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32062 1os9:C (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32063 1os9:D (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32064 1os9:D (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32065 1os9:D (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32066 1os9:D (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32067 1os9:D (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32068 1os9:E (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32069 1os9:E (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32070 1os9:E (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32071 1os9:E (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32072 1os9:E (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32073 1os9:F (1.85) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32074 1os9:F (1.85) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 12813751
    32075 1os9:F (1.85) BS03 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32076 1os9:F (1.85) BS04 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32077 1os9:F (1.85) BS05 CA 3.4.24.65 GO:0004222 ... P39900 12813751
    32078 1ose:A (2.3) BS01 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    32079 1ose:A (2.3) BS02 GLC 3.2.1.1 GO:0003824 ... P00690 8681972
    32080 1ose:A (2.3) BS03 AC1 3.2.1.1 GO:0003824 ... P00690 8681972
    32081 1ose:A (2.3) BS04 BGC 3.2.1.1 GO:0003824 ... P00690 8681972
    32082 1ose:A (2.3) BS05 CA 3.2.1.1 GO:0003824 ... P00690 8681972
    32083 1osf:A (1.75) BS01 KOS 3.6.4.10 GO:0005524 ... P07900 12725864 BindingDB: IC50=919nM
    32084 1osg:A (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32085 1osg:B (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32086 1osg:C (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32087 1osg:C (3.0) BS02 peptide ? GO:0005164 ... Q9Y275 12755599
    32088 1osg:D (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32089 1osg:E (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32090 1osg:F (3.0) BS01 peptide ? GO:0005164 ... Q9Y275 12755599
    32091 1osh:A (1.8) BS01 FEX ? GO:0003677 ... Q96RI1 12718892
    32092 1osl:A (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    32093 1osl:A (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    32094 1osl:B (-1.00) BS01 dna ? GO:0003677 ... P03023 15256668
    32095 1osl:B (-1.00) BS02 dna ? GO:0003677 ... P03023 15256668
    32096 1osn:A (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32097 1osn:A (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32098 1osn:B (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32099 1osn:B (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32100 1osn:C (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32101 1osn:C (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32102 1osn:D (3.2) BS01 ADP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32103 1osn:D (3.2) BS02 BVP 2.7.1.21 GO:0004797 ... P0C0E6 12686543
    32104 1oss:A (1.93) BS01 CA 3.4.21.4 GO:0004252 ... P00775 12885239
    32105 1oss:A (1.93) BS02 BEN 3.4.21.4 GO:0004252 ... P00775 12885239 MOAD: Ki=16.4uM
    PDBbind: -logKd/Ki=4.79, Ki=16.4uM
    32106 1osv:A (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    32107 1osv:A (2.5) BS02 CHC ? GO:0003677 ... Q62735 12718893
    32108 1osv:B (2.5) BS01 peptide ? GO:0003677 ... Q62735 12718893
    32109 1osv:B (2.5) BS02 peptide ? GO:0003677 ... Q62735 12718893
    32110 1osv:B (2.5) BS03 CHC ? GO:0003677 ... Q62735 12718893
    32111 1ot1:A (2.0) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    32112 1ot1:A (2.0) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32113 1ot1:A (2.0) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32114 1ot1:A (2.0) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32115 1ot1:A (2.0) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32116 1ot1:A (2.0) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32117 1ot1:A (2.0) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32118 1ot1:A (2.0) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32119 1ot1:A (2.0) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32120 1ot1:A (2.0) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32121 1ot1:A (2.0) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32122 1ot1:A (2.0) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32123 1ot1:A (2.0) BS13 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32124 1ot1:A (2.0) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32125 1ot2:A (2.1) BS01 BGC 2.4.1.19 GO:0003824 ... P43379 12706817
    32126 1ot2:A (2.1) BS02 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32127 1ot2:A (2.1) BS03 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32128 1ot2:A (2.1) BS04 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32129 1ot2:A (2.1) BS05 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32130 1ot2:A (2.1) BS06 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32131 1ot2:A (2.1) BS07 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32132 1ot2:A (2.1) BS08 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32133 1ot2:A (2.1) BS09 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32134 1ot2:A (2.1) BS10 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32135 1ot2:A (2.1) BS11 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32136 1ot2:A (2.1) BS12 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32137 1ot2:A (2.1) BS13 GLC 2.4.1.19 GO:0003824 ... P43379 12706817
    32138 1ot2:A (2.1) BS14 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32139 1ot2:A (2.1) BS15 CA 2.4.1.19 GO:0003824 ... P43379 12706817
    32140 1ot3:A (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32141 1ot3:B (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32142 1ot3:C (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32143 1ot3:D (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32144 1ot3:E (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32145 1ot3:F (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32146 1ot3:G (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32147 1ot3:H (2.5) BS01 THM 2.7.1.145 GO:0004136 ... Q9XZT6 12741827
    32148 1ot5:A (2.4) BS01 peptide 3.4.21.61 GO:0004252 ... P13134 12779325
    32149 1ot5:A (2.4) BS02 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32150 1ot5:A (2.4) BS03 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32151 1ot5:A (2.4) BS04 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32152 1ot5:B (2.4) BS01 peptide 3.4.21.61 GO:0004252 ... P13134 12779325
    32153 1ot5:B (2.4) BS02 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32154 1ot5:B (2.4) BS03 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32155 1ot5:B (2.4) BS04 CA 3.4.21.61 GO:0004252 ... P13134 12779325
    32156 1ot7:A (2.9) BS01 peptide ? GO:0003677 ... Q62735 12718893
    32157 1ot7:A (2.9) BS02 CHC ? GO:0003677 ... Q62735 12718893
    32158 1ot7:B (2.9) BS01 peptide ? GO:0003677 ... Q62735 12718893
    32159 1ot7:B (2.9) BS02 peptide ? GO:0003677 ... Q62735 12718893
    32160 1ot7:B (2.9) BS03 IU5 ? GO:0003677 ... Q62735 12718893
    32161 1otc:A (2.8) BS01 dna ? GO:0000723 ... P29549 9875850
    32162 1oth:A (1.85) BS01 PAO 2.1.3.3 GO:0000050 ... P00480 9852088 PDBbind: -logKd/Ki=7.00, Ki=0.1uM
    BindingDB: Ki=100nM
    32163 1ots:A (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    32164 1ots:A (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    32165 1ots:B (2.51) BS01 CL ? GO:0005247 ... P37019 12649487
    32166 1ots:B (2.51) BS02 CL ? GO:0005247 ... P37019 12649487
    32167 1ott:A (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    32168 1ott:A (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    32169 1ott:A (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    32170 1ott:B (3.0) BS01 CL ? GO:0005247 ... P37019 12649487
    32171 1ott:B (3.0) BS02 CL ? GO:0005247 ... P37019 12649487
    32172 1ott:B (3.0) BS03 CL ? GO:0005247 ... P37019 12649487
    32173 1otu:A (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    32174 1otu:A (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    32175 1otu:A (3.3) BS03 CL ? GO:0005247 ... P37019 12649487
    32176 1otu:B (3.3) BS01 CL ? GO:0005247 ... P37019 12649487
    32177 1otu:B (3.3) BS02 CL ? GO:0005247 ... P37019 12649487
    32178 1otw:A (2.3) BS01 PQQ 1.3.3.11 GO:0006790 ... P27505 15148379
    32179 1otw:B (2.3) BS01 PQQ 1.3.3.11 GO:0006790 ... P27505 15148379
    32180 1oty:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32181 1oty:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32182 1oty:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32183 1ou4:A (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32184 1ou4:B (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32185 1ou4:C (2.5) BS01 6MP 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32186 1ou6:A (2.07) BS01 168 2.3.1.9 GO:0003985 ... P07097 N/A
    32187 1ou6:B (2.07) BS01 168 2.3.1.9 GO:0003985 ... P07097 N/A
    32188 1ouk:A (2.5) BS01 084 2.7.11.24 GO:0000077 ... Q16539 12897767 MOAD: ic50=0.13nM
    PDBbind: -logKd/Ki=9.89, IC50=0.13nM
    BindingDB: IC50=110nM
    32189 1oum:A (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32190 1oum:B (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32191 1oum:C (2.4) BS01 TAL 2.4.2.1 GO:0003824 ... P0ABP8 14700625
    32192 1ouq:A (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    32193 1ouq:A (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    32194 1ouq:B (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    32195 1ouq:B (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    32196 1ouq:B (3.2) BS03 dna ? GO:0003677 ... P06956 12954782
    32197 1ouq:E (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    32198 1ouq:E (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    32199 1ouq:F (3.2) BS01 dna ? GO:0003677 ... P06956 12954782
    32200 1ouq:F (3.2) BS02 dna ? GO:0003677 ... P06956 12954782
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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