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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3001 1bos:H (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3002 1bos:H (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3003 1bos:H (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3004 1bos:H (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3005 1bos:H (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    3006 1bos:I (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3007 1bos:I (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3008 1bos:I (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3009 1bos:I (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3010 1bos:I (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3011 1bos:J (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    3012 1bos:J (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3013 1bos:J (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3014 1bos:J (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    3015 1bos:K (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    3016 1bos:K (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3017 1bos:K (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3018 1bos:K (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3019 1bos:K (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3020 1bos:L (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3021 1bos:L (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3022 1bos:L (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3023 1bos:L (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3024 1bos:L (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3025 1bos:M (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    3026 1bos:M (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3027 1bos:M (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3028 1bos:M (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    3029 1bos:M (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    3030 1bos:N (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3031 1bos:N (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3032 1bos:N (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3033 1bos:N (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3034 1bos:N (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3035 1bos:O (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    3036 1bos:O (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3037 1bos:O (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3038 1bos:O (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    3039 1bos:P (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    3040 1bos:P (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3041 1bos:P (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3042 1bos:P (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3043 1bos:P (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3044 1bos:Q (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3045 1bos:Q (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3046 1bos:Q (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3047 1bos:Q (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3048 1bos:Q (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3049 1bos:Q (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    3050 1bos:R (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3051 1bos:R (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    3052 1bos:R (2.8) BS03 GAL ? GO:0005576 ... P69179 9485303
    3053 1bos:S (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3054 1bos:S (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3055 1bos:S (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3056 1bos:S (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3057 1bos:S (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3058 1bos:S (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    3059 1bos:T (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    3060 1bos:T (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    3061 1bos:T (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    3062 1bos:T (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    3063 1bos:T (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    3064 1bot:O (3.05) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    3065 1bot:Z (3.05) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    3066 1bou:B (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    3067 1bou:D (2.2) BS01 FE 1.13.11.8 GO:0008198 ... P22636 10467151
    3068 1boz:A (2.1) BS01 NDP 1.5.1.3 GO:0000900 ... P00374 9719595
    3069 1boz:A (2.1) BS02 PRD 1.5.1.3 GO:0000900 ... P00374 9719595 MOAD: ic50=8500nM
    BindingDB: IC50=28nM
    3070 1bp0:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645 MOAD: Kd=4uM
    PDBbind: -logKd/Ki=5.40, Kd=4.0uM
    3071 1bp2:A (1.7) BS01 CA 3.1.1.4 GO:0002227 ... P00593 7265241
    3072 1bp3:A (2.9) BS01 ZN ? GO:0002092 ... P01241 7984244
    3073 1bp4:A (2.2) BS01 ALD 3.4.22.2 GO:0006508 ... P00784 9804696
    3074 1bp6:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645
    3075 1bp7:A (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3076 1bp7:A (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3077 1bp7:B (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3078 1bp7:B (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3079 1bp7:C (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3080 1bp7:C (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3081 1bp7:D (3.0) BS01 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3082 1bp7:D (3.0) BS02 dna 3.1.-.- GO:0004519 ... P05725 9809068
    3083 1bpd:A (3.6) BS01 PO4 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516581
    3084 1bpe:A (2.9) BS01 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06766 7516581
    3085 1bpj:A (2.4) BS01 UMP 2.1.1.45 GO:0004799 ... P00469 10653645
    3086 1bpm:A (2.9) BS01 MG 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    3087 1bpm:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    3088 1bpn:A (2.9) BS01 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    3089 1bpn:A (2.9) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8506345
    3090 1bpq:A (1.8) BS01 CA 3.1.1.4 GO:0002227 ... P00593 1751497
    3091 1bpw:A (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    3092 1bpw:B (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    3093 1bpw:C (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    3094 1bpw:D (2.8) BS01 NAD 1.2.1.3
    1.2.1.47
    GO:0004029 ... P56533 9792097
    3095 1bpx:A (2.4) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3096 1bpx:A (2.4) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3097 1bpx:A (2.4) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3098 1bpy:A (2.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3099 1bpy:A (2.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3100 1bpy:A (2.2) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3101 1bpy:A (2.2) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3102 1bpy:A (2.2) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3103 1bpy:A (2.2) BS06 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3104 1bpz:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3105 1bpz:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3106 1bpz:A (2.6) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3107 1bq1:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3108 1bq1:A (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3109 1bq1:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3110 1bq1:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3111 1bq3:A (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755
    3112 1bq3:D (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755 PDBbind: -logKd/Ki=5.40, Ki=4uM
    3113 1bq4:A (2.5) BS01 BHC 5.4.2.11 GO:0003824 ... P00950 10369755 MOAD: Ki=6uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    3114 1bq6:A (1.56) BS01 COA 2.3.1.74 GO:0009058 ... P30074 10426957
    3115 1bq8:A (1.1) BS01 FE ? GO:0005506 ... P24297 N/A
    3116 1bq9:A (1.2) BS01 FE ? GO:0005506 ... P24297 N/A
    3117 1bqb:A (1.72) BS01 ZN 3.4.24.29 GO:0004222 ... P81177 9753696
    3118 1bqb:A (1.72) BS02 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3119 1bqb:A (1.72) BS03 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3120 1bqb:A (1.72) BS04 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3121 1bqi:A (2.5) BS01 SBA 3.4.22.2 GO:0006508 ... P00784 9804696
    3122 1bqm:A (3.1) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120 PDBbind: -logKd/Ki=7.35, IC50=0.045uM
    3123 1bqn:A (3.3) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120 PDBbind: -logKd/Ki=6.22, IC50=0.60uM
    3124 1bqo:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3125 1bqo:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3126 1bqo:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3127 1bqo:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3128 1bqo:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3129 1bqo:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3130 1bqo:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3131 1bqo:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3132 1bqo:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3133 1bqo:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3134 1bqo:B (2.3) BS06 N25 3.4.24.17 GO:0004222 ... P08254 9733482 MOAD: ic50=18.4nM
    PDBbind: -logKd/Ki=7.74, IC50=18.4nM
    BindingDB: IC50=18nM, Ki=18nM
    3135 1bqq:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    3136 1bqq:M (2.75) BS02 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    3137 1bqq:M (2.75) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    3138 1bqq:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    3139 1bqy:A (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    3140 1bqy:B (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    3141 1br5:A (2.5) BS01 NEO 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki>2mM
    PDBbind: -logKd/Ki=2.70, Ki>2mM
    3142 1br6:A (2.3) BS01 PT1 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki=0.6mM
    PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    3143 1br8:I (2.9) BS01 peptide ? GO:0002020 ... P01008 9761669
    3144 1bra:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8478942
    3145 1bra:A (2.2) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 8478942 MOAD: Ki=15000uM
    PDBbind: -logKd/Ki=1.82, Ki=15000uM
    3146 1brd:A (3.5) BS01 RET ? GO:0005216 ... P02945 2359127
    3147 1brf:A (0.95) BS01 FE ? GO:0005506 ... P24297 N/A
    3148 1brp:A (2.5) BS01 RTL ? GO:0001654 ... P02753 8464067
    3149 1brr:A (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    3150 1brr:A (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    3151 1brr:A (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3152 1brr:A (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    3153 1brr:A (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3154 1brr:A (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3155 1brr:A (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    3156 1brr:B (2.9) BS01 GLC ? GO:0005216 ... P02945 9751724
    3157 1brr:B (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    3158 1brr:B (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3159 1brr:B (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    3160 1brr:B (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3161 1brr:B (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3162 1brr:B (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    3163 1brr:C (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    3164 1brr:C (2.9) BS02 ARC ? GO:0005216 ... P02945 9751724
    3165 1brr:C (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3166 1brr:C (2.9) BS04 RET ? GO:0005216 ... P02945 9751724
    3167 1brr:C (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3168 1brr:C (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3169 1bru:P (2.3) BS01 1NB 3.4.21.71 GO:0004175 ... P08419 N/A
    3170 1brw:A (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    3171 1brw:A (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    3172 1brw:B (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    3173 1brw:B (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    3174 1brw:B (2.1) BS03 URA 2.4.2.2 GO:0004645 ... P77836 9817849
    3175 1brx:A (2.3) BS01 RET ? GO:0005216 ... P02945 9632391
    3176 1bs1:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    3177 1bs1:A (1.8) BS02 ADP 6.3.3.3 GO:0000287 ... P13000 9865950
    3178 1bs1:A (1.8) BS03 DAA 6.3.3.3 GO:0000287 ... P13000 9865950
    3179 1bs2:A (2.75) BS01 ARG 6.1.1.19 GO:0000166 ... Q05506 9736621
    3180 1bs3:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3181 1bs3:A (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    3182 1bs3:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3183 1bs3:B (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    3184 1bs4:A (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3185 1bs4:B (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3186 1bs4:C (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3187 1bs5:A (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3188 1bs5:B (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3189 1bs5:C (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3190 1bs6:A (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3191 1bs6:B (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3192 1bs6:C (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3193 1bs8:A (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3194 1bs8:A (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3195 1bs8:B (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3196 1bs8:B (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3197 1bs8:C (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3198 1bs8:C (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3199 1bsi:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 10091666
    3200 1bsj:A (3.0) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 10200158

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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