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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26401 1mh1:A (1.38) BS02 GNP 3.6.5.2 GO:0001764 ... P63000 9033596
    26402 1mh2:A (2.7) BS01 ZN 3.1.1.4 GO:0004623 ... P60043 N/A
    26403 1mh5:A (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492 PDBbind: -logKd/Ki=9.21, Kd=0.61nM
    26404 1mh5:L (2.1) BS01 HAL ? GO:0005576 ... P01837 12948492
    26405 1mh9:A (1.8) BS01 PO4 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    26406 1mh9:A (1.8) BS02 MG 3.1.3.- GO:0008253 ... Q9NPB1 12352955
    26407 1mhd:A (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    26408 1mhd:A (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    26409 1mhd:B (2.8) BS01 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    26410 1mhd:B (2.8) BS02 dna ? GO:0005667 ... P84022 9741623 PDBbind: Kd=114nM
    26411 1mhl:A (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    26412 1mhl:B (2.25) BS01 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    26413 1mhl:C (2.25) BS01 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    26414 1mhl:C (2.25) BS02 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    26415 1mhl:C (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    26416 1mhl:C (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    26417 1mhl:D (2.25) BS01 MAN 1.11.2.2 GO:0004601 ... P05164 7840679
    26418 1mhl:D (2.25) BS02 FUC 1.11.2.2 GO:0004601 ... P05164 7840679
    26419 1mhl:D (2.25) BS03 CA 1.11.2.2 GO:0004601 ... P05164 7840679
    26420 1mhl:D (2.25) BS04 HEM 1.11.2.2 GO:0004601 ... P05164 7840679
    26421 1mho:A (2.0) BS01 CA ? GO:0005509 ... P02638 9519413
    26422 1mho:A (2.0) BS02 CA ? GO:0005509 ... P02638 9519413
    26423 1mht:A (2.6) BS01 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    26424 1mht:A (2.6) BS02 dna 2.1.1.37 GO:0003677 ... P05102 8293469
    26425 1mht:A (2.6) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 8293469
    26426 1mhw:A (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26427 1mhw:A (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26428 1mhw:A (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26429 1mhw:B (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26430 1mhw:B (1.9) BS02 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26431 1mhw:B (1.9) BS03 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26432 1mhw:C (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26433 1mhw:D (1.9) BS01 peptide 3.4.22.15 GO:0006508 ... P07711 12431059
    26434 1mi3:A (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    26435 1mi3:B (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    26436 1mi3:C (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    26437 1mi3:D (1.8) BS01 NAD 1.1.1.307 GO:0004032 ... O74237 12733986
    26438 1mi4:A (1.7) BS01 S3P 2.5.1.19 GO:0003824 ... P0A6D3 12430021 BindingDB: Kd=7000nM
    26439 1mid:A (1.71) BS01 LAP ? GO:0006869 ... P07597 N/A
    26440 1mid:A (1.71) BS02 LAP ? GO:0006869 ... P07597 N/A
    26441 1mid:A (1.71) BS03 LAP ? GO:0006869 ... P07597 N/A
    26442 1mih:A (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    26443 1mih:A (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    26444 1mih:B (2.7) BS01 MN ? GO:0000156 ... P0AE67 12591865
    26445 1mih:B (2.7) BS02 BEF ? GO:0000156 ... P0AE67 12591865
    26446 1mik:A (1.76) BS01 peptide 5.2.1.8 GO:0000413 ... P62937 7650689
    26447 1mio:A (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    26448 1mio:A (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    26449 1mio:B (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    26450 1mio:B (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    26451 1mio:B (3.0) BS03 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    26452 1mio:C (3.0) BS01 CFM 1.18.6.1 GO:0005524 ... P00467 8393705
    26453 1mio:C (3.0) BS02 CLP 1.18.6.1 GO:0005524 ... P00467 8393705
    26454 1mio:D (3.0) BS01 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    26455 1mio:D (3.0) BS02 CA 1.18.6.1 GO:0005524 ... P11347 8393705
    26456 1mio:D (3.0) BS03 CLP 1.18.6.1 GO:0005524 ... P11347 8393705
    26457 1miw:A (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    26458 1miw:B (3.0) BS01 ATP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    26459 1miy:A (3.52) BS01 MG 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    26460 1miy:A (3.52) BS02 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    26461 1miy:B (3.52) BS01 CTP 2.7.7.72 GO:0000049 ... Q7SIB1 12526808
    26462 1mj1:A (13.0) BS01 rna ? GO:0003746 ... Q01698 12379845
    26463 1mj1:O (13.0) BS01 rna ? GO:0000049 ... Q5SHN3 12379845
    26464 1mj2:A (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26465 1mj2:A (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26466 1mj2:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26467 1mj2:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26468 1mj2:B (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26469 1mj2:B (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26470 1mj2:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26471 1mj2:B (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26472 1mj2:B (2.4) BS05 CA ? GO:0003677 ... P0A8U6 10986458
    26473 1mj2:C (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26474 1mj2:C (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26475 1mj2:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26476 1mj2:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26477 1mj2:D (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26478 1mj2:D (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26479 1mj2:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26480 1mj2:D (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26481 1mj3:A (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26482 1mj3:B (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26483 1mj3:B (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26484 1mj3:C (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26485 1mj3:C (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26486 1mj3:E (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26487 1mj3:F (2.1) BS01 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26488 1mj3:F (2.1) BS02 HXC 4.2.1.17
    5.3.3.8    		 GO:0003824 ... P14604 12445775
    26489 1mj9:A (2.5) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    26490 1mja:A (2.26) BS01 COA 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    26491 1mjb:A (2.5) BS01 ACO 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q08649 12368900
    26492 1mje:A (3.5) BS01 dna ? GO:0000724 ... P97929 12228710
    26493 1mjg:A (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26494 1mjg:A (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26495 1mjg:A (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    26496 1mjg:B (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26497 1mjg:B (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26498 1mjg:B (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    26499 1mjg:C (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26500 1mjg:C (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26501 1mjg:C (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    26502 1mjg:D (2.2) BS01 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26503 1mjg:D (2.2) BS02 SF4 1.2.7.4 GO:0003824 ... P27989 12386327
    26504 1mjg:D (2.2) BS03 XCC 1.2.7.4 GO:0003824 ... P27989 12386327
    26505 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    26506 1mjg:M (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    26507 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    26508 1mjg:N (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    26509 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    26510 1mjg:O (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    26511 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    26512 1mjg:P (2.2) BS02 SF4 2.3.1.169 GO:0003824 ... P27988 12386327
    26513 1mji:A (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    26514 1mji:A (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    26515 1mji:A (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    26516 1mji:B (2.5) BS01 rna ? GO:0000049 ... P41201 12515387
    26517 1mji:B (2.5) BS02 rna ? GO:0000049 ... P41201 12515387
    26518 1mji:B (2.5) BS03 MG ? GO:0000049 ... P41201 12515387
    26519 1mjl:A (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    26520 1mjl:A (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    26521 1mjl:B (2.1) BS01 SAM ? GO:0003677 ... P0A8U6 N/A
    26522 1mjl:B (2.1) BS02 SAM ? GO:0003677 ... P0A8U6 N/A
    26523 1mjm:A (2.2) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26524 1mjm:A (2.2) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26525 1mjm:B (2.2) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26526 1mjm:B (2.2) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26527 1mjo:A (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26528 1mjo:A (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26529 1mjo:A (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26530 1mjo:A (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26531 1mjo:B (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26532 1mjo:B (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26533 1mjo:B (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26534 1mjo:B (2.1) BS04 CA ? GO:0003677 ... P0A8U6 10986458
    26535 1mjo:B (2.1) BS05 SAM ? GO:0003677 ... P0A8U6 10986458
    26536 1mjo:C (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26537 1mjo:C (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26538 1mjo:C (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26539 1mjo:C (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26540 1mjo:D (2.1) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26541 1mjo:D (2.1) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26542 1mjo:D (2.1) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26543 1mjo:D (2.1) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26544 1mjp:A (3.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26545 1mjp:B (3.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26546 1mjp:B (3.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26547 1mjq:A (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26548 1mjq:A (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26549 1mjq:A (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26550 1mjq:A (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26551 1mjq:B (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26552 1mjq:B (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26553 1mjq:B (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26554 1mjq:C (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26555 1mjq:C (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26556 1mjq:C (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26557 1mjq:C (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26558 1mjq:D (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26559 1mjq:D (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26560 1mjq:D (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26561 1mjq:G (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26562 1mjq:G (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26563 1mjq:G (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26564 1mjq:G (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26565 1mjq:H (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26566 1mjq:H (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26567 1mjq:H (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26568 1mjq:H (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26569 1mjq:I (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26570 1mjq:I (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26571 1mjq:I (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26572 1mjq:I (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26573 1mjq:J (2.4) BS01 dna ? GO:0003677 ... P0A8U6 10986458
    26574 1mjq:J (2.4) BS02 dna ? GO:0003677 ... P0A8U6 10986458
    26575 1mjq:J (2.4) BS03 SAM ? GO:0003677 ... P0A8U6 10986458
    26576 1mjq:J (2.4) BS04 SAM ? GO:0003677 ... P0A8U6 10986458
    26577 1mjt:A (2.4) BS01 GLC 1.14.14.47 GO:0004517 ... P0A004 12467576
    26578 1mjt:A (2.4) BS02 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    26579 1mjt:A (2.4) BS03 HEM 1.14.14.47 GO:0004517 ... P0A004 12467576
    26580 1mjt:A (2.4) BS04 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    26581 1mjt:A (2.4) BS05 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    26582 1mjt:A (2.4) BS06 ITU 1.14.14.47 GO:0004517 ... P0A004 12467576
    26583 1mjt:B (2.4) BS01 FRU 1.14.14.47 GO:0004517 ... P0A004 12467576
    26584 1mjt:B (2.4) BS02 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    26585 1mjt:B (2.4) BS03 NAD 1.14.14.47 GO:0004517 ... P0A004 12467576
    26586 1mjt:B (2.4) BS04 HEM 1.14.14.47 GO:0004517 ... P0A004 12467576
    26587 1mjt:B (2.4) BS05 ITU 1.14.14.47 GO:0004517 ... P0A004 12467576
    26588 1mjw:A (1.95) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    26589 1mjw:B (1.95) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    26590 1mjx:A (2.15) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    26591 1mjx:B (2.15) BS01 SO4 3.6.1.1 GO:0000287 ... P0A7A9 9668207
    26592 1mk1:A (2.0) BS01 APR 3.6.1.13 GO:0005829 ... O33199 12906832
    26593 1mk8:A (1.65) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 12684005
    26594 1mka:A (2.0) BS01 DAC 4.2.1.59
    5.3.3.14    		 GO:0005737 ... P0A6Q3 8805534
    26595 1mka:A (2.0) BS02 DAC 4.2.1.59
    5.3.3.14    		 GO:0005737 ... P0A6Q3 8805534
    26596 1mka:B (2.0) BS01 DAC 4.2.1.59
    5.3.3.14    		 GO:0005737 ... P0A6Q3 8805534
    26597 1mka:B (2.0) BS02 DAC 4.2.1.59
    5.3.3.14    		 GO:0005737 ... P0A6Q3 8805534
    26598 1mkd:A (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    26599 1mkd:A (2.9) BS02 ZAR 3.1.4.53 GO:0004114 ... Q08499 12387865 PDBbind: -logKd/Ki=6.80, IC50=160nM
    BindingDB: IC50=390nM
    26600 1mkd:B (2.9) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 12387865
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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