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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25201 1m18:F (2.45) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25202 1m18:F (2.45) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25203 1m19:B (2.3) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25204 1m19:B (2.3) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25205 1m19:F (2.3) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25206 1m19:F (2.3) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25207 1m1a:B (2.65) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25208 1m1a:B (2.65) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25209 1m1a:F (2.65) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25210 1m1a:F (2.65) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    25211 1m1b:A (2.25) BS01 MG 5.4.2.9 GO:0003824 ... P56839 12162742
    25212 1m1b:A (2.25) BS02 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    25213 1m1b:B (2.25) BS01 SPV 5.4.2.9 GO:0003824 ... P56839 12162742 MOAD: Ki=22uM
    25214 1m1j:B (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    25215 1m1j:B (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    25216 1m1j:C (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    25217 1m1j:C (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    25218 1m1j:E (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    25219 1m1j:E (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    25220 1m1j:F (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    25221 1m1j:F (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    25222 1m1k:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12150912
    25223 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    25224 1m1k:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12150912
    25225 1m1k:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12150912
    25226 1m1k:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12150912
    25227 1m1k:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12150912
    25228 1m1k:C (3.2) BS01 rna ? GO:0002181 ... P20276 12150912
    25229 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    25230 1m1k:D (3.2) BS01 rna ? GO:0003723 ... P20279 12150912
    25231 1m1k:E (3.2) BS01 rna ? GO:0003723 ... P12735 12150912
    25232 1m1k:F (3.2) BS01 rna ? GO:0000049 ... P14124 12150912
    25233 1m1k:F (3.2) BS02 rna ? GO:0000049 ... P14124 12150912
    25234 1m1k:G (3.2) BS01 rna ? GO:0002181 ... P14135 12150912
    25235 1m1k:H (3.2) BS01 rna ? GO:0001682 ... P12743 12150912
    25236 1m1k:J (3.2) BS01 rna ? GO:0000027 ... P60617 12150912
    25237 1m1k:K (3.2) BS01 rna ? GO:0003729 ... P29198 12150912
    25238 1m1k:L (3.2) BS01 rna ? GO:0003735 ... P22450 12150912
    25239 1m1k:M (3.2) BS01 rna ? GO:0003735 ... P12737 12150912
    25240 1m1k:N (3.2) BS01 rna ? GO:0002181 ... P60618 12150912
    25241 1m1k:O (3.2) BS01 rna ? GO:0000027 ... P14123 12150912
    25242 1m1k:O (3.2) BS02 rna ? GO:0000027 ... P14123 12150912
    25243 1m1k:P (3.2) BS01 rna ? GO:0003723 ... P12733 12150912
    25244 1m1k:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12150912
    25245 1m1k:R (3.2) BS01 rna ? GO:0003735 ... P12734 12150912
    25246 1m1k:R (3.2) BS02 rna ? GO:0003735 ... P12734 12150912
    25247 1m1k:S (3.2) BS01 rna ? GO:0002181 ... P10970 12150912
    25248 1m1k:T (3.2) BS01 rna ? GO:0000027 ... P12732 12150912
    25249 1m1k:U (3.2) BS01 rna ? GO:0002181 ... P10972 12150912
    25250 1m1k:U (3.2) BS02 MG ? GO:0002181 ... P10972 12150912
    25251 1m1k:V (3.2) BS01 rna ? GO:0003735 ... P14116 12150912
    25252 1m1k:W (3.2) BS01 rna ? GO:0003735 ... P10971 12150912
    25253 1m1k:X (3.2) BS01 rna ? GO:0000463 ... P14121 12150912
    25254 1m1k:X (3.2) BS02 rna ? GO:0000463 ... P14121 12150912
    25255 1m1k:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12150912
    25256 1m1k:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12150912
    25257 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    25258 1m1n:A (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    25259 1m1n:A (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    25260 1m1n:B (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25261 1m1n:B (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    25262 1m1n:B (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25263 1m1n:C (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    25264 1m1n:C (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    25265 1m1n:D (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25266 1m1n:D (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25267 1m1n:D (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    25268 1m1n:E (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    25269 1m1n:E (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    25270 1m1n:F (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25271 1m1n:F (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    25272 1m1n:F (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25273 1m1n:G (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    25274 1m1n:G (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    25275 1m1n:H (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25276 1m1n:H (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    25277 1m1n:H (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    25278 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    25279 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    25280 1m1x:A (3.3) BS01 MN ? GO:0001525 ... P06756 11884718
    25281 1m1x:A (3.3) BS02 MN ? GO:0001525 ... P06756 11884718
    25282 1m1x:A (3.3) BS03 MN ? GO:0001525 ... P06756 11884718
    25283 1m1x:A (3.3) BS04 MN ? GO:0001525 ... P06756 11884718
    25284 1m1x:A (3.3) BS05 MN ? GO:0001525 ... P06756 11884718
    25285 1m1x:B (3.3) BS01 MN ? GO:0001618 ... P05106 11884718
    25286 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25287 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25288 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25289 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25290 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25291 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25292 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25293 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25294 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25295 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25296 1m1y:E (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25297 1m1y:F (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25298 1m1y:G (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25299 1m1y:H (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25300 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25301 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25302 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25303 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25304 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25305 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25306 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25307 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25308 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25309 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25310 1m1y:M (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25311 1m1y:N (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25312 1m1y:O (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25313 1m1y:P (3.2) BS01 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25314 1m26:A (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    25315 1m26:A (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    25316 1m26:A (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    25317 1m26:C (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    25318 1m26:C (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    25319 1m26:C (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    25320 1m26:E (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    25321 1m26:E (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    25322 1m26:E (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    25323 1m26:G (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    25324 1m26:G (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    25325 1m26:G (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    25326 1m27:A (2.5) BS01 peptide ? GO:0005737 ... O60880 12545174
    25327 1m2g:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25328 1m2g:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    25329 1m2h:A (1.8) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25330 1m2h:A (1.8) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    25331 1m2j:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25332 1m2j:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    25333 1m2k:A (1.47) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25334 1m2k:A (1.47) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    25335 1m2n:A (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25336 1m2n:A (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    25337 1m2n:B (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    25338 1m2n:B (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    25339 1m2o:A (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    25340 1m2o:A (2.5) BS02 GNP ? GO:0000139 ... P15303 12239560
    25341 1m2o:B (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    25342 1m2o:B (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    25343 1m2o:C (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    25344 1m2o:D (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    25345 1m2o:D (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    25346 1m2p:A (2.0) BS01 HNA 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.11, Ki=0.78uM
    BindingDB: Ki=780nM
    25347 1m2q:A (1.79) BS01 MNX 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.10, Ki=0.80uM
    BindingDB: Ki=800nM
    25348 1m2r:A (1.7) BS01 MNY 2.7.11.1 GO:0004672 ... P28523 12419810 PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    BindingDB: Ki=350nM
    25349 1m2t:A (1.89) BS01 ADE 3.2.2.22 GO:0017148 ... P81446 12351890
    25350 1m2v:A (2.75) BS01 ZN ? GO:0000139 ... P15303 12239560
    25351 1m2v:B (2.75) BS01 ZN ? GO:0000139 ... P40482 12239560
    25352 1m2w:A (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    25353 1m2w:A (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    25354 1m2w:B (1.8) BS01 NAD 1.1.1.67 GO:0000166 ... O08355 12196534
    25355 1m2w:B (1.8) BS02 MTL 1.1.1.67 GO:0000166 ... O08355 12196534
    25356 1m2x:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25357 1m2x:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25358 1m2x:A (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25359 1m2x:A (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    PDBbind: -logKd/Ki=4.15, Ki=70uM
    25360 1m2x:B (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25361 1m2x:B (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25362 1m2x:B (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25363 1m2x:B (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    25364 1m2x:C (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25365 1m2x:C (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25366 1m2x:C (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25367 1m2x:C (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    25368 1m2x:D (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25369 1m2x:D (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25370 1m2x:D (1.5) BS03 ZN 3.5.2.6 GO:0008270 ... O08498 12684522
    25371 1m2x:D (1.5) BS04 MCO 3.5.2.6 GO:0008270 ... O08498 12684522 MOAD: Ki~85uM
    25372 1m32:A (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25373 1m32:A (2.2) BS02 POA 2.6.1.37 GO:0008483 ... P96060 12403617
    25374 1m32:B (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25375 1m32:B (2.2) BS02 PO4 2.6.1.37 GO:0008483 ... P96060 12403617
    25376 1m32:B (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25377 1m32:C (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25378 1m32:C (2.2) BS02 POA 2.6.1.37 GO:0008483 ... P96060 12403617
    25379 1m32:C (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25380 1m32:D (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25381 1m32:D (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25382 1m32:E (2.2) BS01 PO4 2.6.1.37 GO:0008483 ... P96060 12403617
    25383 1m32:E (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25384 1m32:E (2.2) BS03 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25385 1m32:F (2.2) BS01 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25386 1m32:F (2.2) BS02 PLP 2.6.1.37 GO:0008483 ... P96060 12403617
    25387 1m33:A (1.7) BS01 3OH 3.1.1.85 GO:0005515 ... P13001 12732651
    25388 1m34:A (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25389 1m34:A (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25390 1m34:B (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25391 1m34:B (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25392 1m34:B (2.3) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25393 1m34:C (2.3) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    25394 1m34:C (2.3) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    25395 1m34:D (2.3) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25396 1m34:D (2.3) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    25397 1m34:D (2.3) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    25398 1m34:E (2.3) BS01 ALF 1.18.6.1 GO:0005524 ... P00459 12501184
    25399 1m34:E (2.3) BS02 SF4 1.18.6.1 GO:0005524 ... P00459 12501184
    25400 1m34:E (2.3) BS03 ADP 1.18.6.1 GO:0005524 ... P00459 12501184
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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