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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21601 1k9m:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    21602 1k9m:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    21603 1k9m:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    21604 1k9m:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    21605 1k9m:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    21606 1k9m:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    21607 1k9m:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    21608 1k9m:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    21609 1k9m:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    21610 1k9m:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    21611 1k9m:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    21612 1k9m:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    21613 1k9m:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    21614 1k9m:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    21615 1k9m:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    21616 1k9m:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    21617 1k9m:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    21618 1k9m:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    21619 1k9m:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    21620 1k9m:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    21621 1k9m:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    21622 1k9m:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    21623 1k9m:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    21624 1k9m:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    21625 1k9m:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    21626 1k9m:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    21627 1k9m:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    21628 1k9m:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    21629 1k9m:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    21630 1k9m:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    21631 1k9m:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    21632 1k9s:A (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21633 1k9s:A (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    21634 1k9s:B (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21635 1k9s:B (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21636 1k9s:C (2.0) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21637 1k9s:C (2.0) BS02 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21638 1k9s:D (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017 PDBbind: -logKd/Ki=6.52, Ki=0.30uM
    21639 1k9s:D (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21640 1k9s:D (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21641 1k9s:E (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21642 1k9s:E (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21643 1k9s:E (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21644 1k9s:F (2.0) BS01 FM2 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21645 1k9s:F (2.0) BS02 PO4 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21646 1k9s:F (2.0) BS03 FM1 2.4.2.1 GO:0003824 ... P0ABP8 11786017
    21647 1k9y:A (1.9) BS01 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    21648 1k9y:A (1.9) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    21649 1k9y:A (1.9) BS03 AMP 3.1.3.7 GO:0000103 ... P32179 12126627
    21650 1k9z:A (1.5) BS01 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21651 1k9z:A (1.5) BS02 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21652 1k9z:A (1.5) BS03 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21653 1k9z:A (1.5) BS04 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21654 1k9z:A (1.5) BS05 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21655 1k9z:A (1.5) BS06 ZN 3.1.3.7 GO:0000103 ... P32179 N/A
    21656 1ka0:A (1.8) BS01 AMP 3.1.3.7 GO:0000103 ... P32179 N/A
    21657 1ka1:A (1.3) BS01 CA 3.1.3.7 GO:0000103 ... P32179 12126627
    21658 1ka1:A (1.3) BS02 MG 3.1.3.7 GO:0000103 ... P32179 12126627
    21659 1ka1:A (1.3) BS03 A3P 3.1.3.7 GO:0000103 ... P32179 12126627
    21660 1ka2:A (2.2) BS01 MG 3.4.17.19 GO:0004180 ... Q8U3L0 11839307
    21661 1ka6:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    21662 1ka7:A (-1.00) BS01 peptide ? GO:0002250 ... O60880 11823424
    21663 1kae:A (1.7) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21664 1kae:A (1.7) BS02 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    21665 1kae:A (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    21666 1kae:B (1.7) BS01 HSO 1.1.1.23 GO:0000105 ... P06988 11842181
    21667 1kae:B (1.7) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21668 1kae:B (1.7) BS03 NAD 1.1.1.23 GO:0000105 ... P06988 11842181
    21669 1kah:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21670 1kah:A (2.1) BS02 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    21671 1kah:A (2.1) BS03 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    21672 1kah:B (2.1) BS01 HIS 1.1.1.23 GO:0000105 ... P06988 11842181
    21673 1kah:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21674 1kak:A (2.5) BS01 FNP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: ic50=26uM
    PDBbind: -logKd/Ki=4.59, IC50=26uM
    21675 1kao:A (1.7) BS01 GDP 3.6.5.2 GO:0000287 ... P10114 9312017
    21676 1kap:P (1.64) BS01 peptide 3.4.24.40 GO:0001869 ... Q03023 8253063
    21677 1kap:P (1.64) BS02 ZN 3.4.24.40 GO:0001869 ... Q03023 8253063
    21678 1kap:P (1.64) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21679 1kap:P (1.64) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21680 1kap:P (1.64) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21681 1kap:P (1.64) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21682 1kap:P (1.64) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21683 1kap:P (1.64) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21684 1kap:P (1.64) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21685 1kap:P (1.64) BS10 CA 3.4.24.40 GO:0001869 ... Q03023 8253063
    21686 1kaq:A (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21687 1kaq:B (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21688 1kaq:C (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21689 1kaq:D (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21690 1kaq:E (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21691 1kaq:F (3.2) BS01 DND 2.7.7.18 GO:0003824 ... P54455 11704676
    21692 1kar:A (2.1) BS01 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21693 1kar:A (2.1) BS02 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    21694 1kar:B (2.1) BS01 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    21695 1kar:B (2.1) BS02 ZN 1.1.1.23 GO:0000105 ... P06988 11842181
    21696 1kar:B (2.1) BS03 HSM 1.1.1.23 GO:0000105 ... P06988 11842181
    21697 1kav:A (2.35) BS01 FEP 3.1.3.48 GO:0004725 ... P18031 11741477 MOAD: Ki=1.5uM
    PDBbind: -logKd/Ki=5.82, Ki=1.5uM
    21698 1kb2:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    21699 1kb2:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    21700 1kb2:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    21701 1kb2:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    21702 1kb2:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    21703 1kb2:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    21704 1kb2:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    21705 1kb2:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    21706 1kb3:A (2.1) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11772019
    21707 1kb4:A (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    21708 1kb4:A (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    21709 1kb4:A (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    21710 1kb4:A (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    21711 1kb4:B (2.8) BS01 dna ? GO:0003700 ... P11473 11980721
    21712 1kb4:B (2.8) BS02 dna ? GO:0003700 ... P11473 11980721
    21713 1kb4:B (2.8) BS03 ZN ? GO:0003700 ... P11473 11980721
    21714 1kb4:B (2.8) BS04 ZN ? GO:0003700 ... P11473 11980721
    21715 1kb6:A (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    21716 1kb6:A (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    21717 1kb6:A (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    21718 1kb6:A (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    21719 1kb6:B (2.7) BS01 dna ? GO:0003700 ... P11473 11980721
    21720 1kb6:B (2.7) BS02 dna ? GO:0003700 ... P11473 11980721
    21721 1kb6:B (2.7) BS03 ZN ? GO:0003700 ... P11473 11980721
    21722 1kb6:B (2.7) BS04 ZN ? GO:0003700 ... P11473 11980721
    21723 1kb9:C (2.3) BS01 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    21724 1kb9:C (2.3) BS02 HEM 7.1.1.8 GO:0005739 ... P00163 11726495
    21725 1kb9:C (2.3) BS03 SMA 7.1.1.8 GO:0005739 ... P00163 11726495
    21726 1kb9:C (2.3) BS04 UQ6 7.1.1.8 GO:0005739 ... P00163 11726495
    21727 1kb9:C (2.3) BS05 PIE 7.1.1.8 GO:0005739 ... P00163 11726495
    21728 1kb9:C (2.3) BS06 CDL 7.1.1.8 GO:0005739 ... P00163 11726495
    21729 1kbb:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    21730 1kbc:A (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    21731 1kbc:A (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    21732 1kbc:A (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    21733 1kbc:A (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    21734 1kbc:A (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    21735 1kbc:A (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    21736 1kbc:B (1.8) BS01 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    21737 1kbc:B (1.8) BS02 CA 3.4.24.34 GO:0004222 ... P22894 9249047
    21738 1kbc:B (1.8) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    21739 1kbc:B (1.8) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 9249047
    21740 1kbc:B (1.8) BS05 HLE 3.4.24.34 GO:0004222 ... P22894 9249047
    21741 1kbc:B (1.8) BS06 RIN 3.4.24.34 GO:0004222 ... P22894 9249047
    21742 1kbk:A (1.9) BS01 CA 3.2.1.1 GO:0003824 ... P04746 11914097
    21743 1kbn:A (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    21744 1kbn:B (2.0) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 N/A
    21745 1kbo:A (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21746 1kbo:A (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21747 1kbo:A (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21748 1kbo:A (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21749 1kbo:B (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21750 1kbo:B (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21751 1kbo:B (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21752 1kbo:B (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21753 1kbo:C (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21754 1kbo:C (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21755 1kbo:C (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21756 1kbo:C (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21757 1kbo:D (2.3) BS01 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21758 1kbo:D (2.3) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21759 1kbo:D (2.3) BS03 340 1.6.5.2 GO:0000209 ... P15559 11735396
    21760 1kbo:D (2.3) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21761 1kbq:A (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21762 1kbq:A (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21763 1kbq:A (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21764 1kbq:A (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21765 1kbq:B (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21766 1kbq:B (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21767 1kbq:B (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21768 1kbq:B (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21769 1kbq:C (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21770 1kbq:C (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21771 1kbq:C (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21772 1kbq:C (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21773 1kbq:D (1.8) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21774 1kbq:D (1.8) BS02 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21775 1kbq:D (1.8) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11735396
    21776 1kbq:D (1.8) BS04 936 1.6.5.2 GO:0000209 ... P15559 11735396 MOAD: Ki=0.45uM
    BindingDB: Ki=450nM
    21777 1kbu:A (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    21778 1kbu:B (2.2) BS01 dna ? GO:0003677 ... P06956 12051940
    21779 1kbu:B (2.2) BS02 dna ? GO:0003677 ... P06956 12051940
    21780 1kby:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 16228547
    21781 1kby:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 16228547
    21782 1kby:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 16228547
    21783 1kby:L (2.5) BS04 BPH ? GO:0009772 ... P0C0Y8 16228547
    21784 1kby:L (2.5) BS05 BPH ? GO:0009772 ... P0C0Y8 16228547
    21785 1kby:L (2.5) BS06 FE ? GO:0009772 ... P0C0Y8 16228547
    21786 1kby:L (2.5) BS07 U10 ? GO:0009772 ... P0C0Y8 16228547
    21787 1kby:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 16228547
    21788 1kby:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 16228547
    21789 1kby:M (2.5) BS03 BPH ? GO:0009772 ... P0C0Y9 16228547
    21790 1kby:M (2.5) BS04 BPH ? GO:0009772 ... P0C0Y9 16228547
    21791 1kby:M (2.5) BS05 FE ? GO:0009772 ... P0C0Y9 16228547
    21792 1kby:M (2.5) BS06 BPH ? GO:0009772 ... P0C0Y9 16228547
    21793 1kby:M (2.5) BS07 U10 ? GO:0009772 ... P0C0Y9 16228547
    21794 1kby:M (2.5) BS08 SPO ? GO:0009772 ... P0C0Y9 16228547
    21795 1kc1:A (2.6) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    21796 1kc3:A (2.7) BS01 NDP 1.1.1.133 GO:0005829 ... P26392 12057193
    21797 1kc3:A (2.7) BS02 TRH 1.1.1.133 GO:0005829 ... P26392 12057193
    21798 1kc4:A (-1.00) BS01 peptide ? GO:0005515 ... P60615 11790782
    21799 1kc5:L (2.5) BS01 peptide ? GO:0005576 ... P01837 11859128
    21800 1kc6:A (2.6) BS01 dna 3.1.21.4 GO:0003677 ... P17743 11742344

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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