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BioLiP
Download all results in tab-seperated text for 713946 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    21401 1k73:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    21402 1k73:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    21403 1k73:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    21404 1k73:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    21405 1k73:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    21406 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    21407 1k73:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    21408 1k73:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    21409 1k73:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    21410 1k73:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    21411 1k73:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    21412 1k73:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    21413 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    21414 1k74:A (2.3) BS01 peptide ? GO:0003677 ... P19793 11698662
    21415 1k74:A (2.3) BS02 9CR ? GO:0003677 ... P19793 11698662 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    21416 1k74:D (2.3) BS01 peptide ? GO:0003677 ... P37231 11698662
    21417 1k74:D (2.3) BS02 544 ? GO:0003677 ... P37231 11698662 BindingDB: EC50=0.280000nM
    21418 1k77:A (1.63) BS01 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    21419 1k77:A (1.63) BS02 MG 5.3.1.35 GO:0008903 ... Q46891 12112708
    21420 1k78:A (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    21421 1k78:A (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    21422 1k78:B (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    21423 1k78:B (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    21424 1k78:E (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    21425 1k78:E (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    21426 1k78:F (2.25) BS01 dna ? GO:0003700 ... P27577 11779502
    21427 1k78:F (2.25) BS02 dna ? GO:0003700 ... P27577 11779502
    21428 1k78:I (2.25) BS01 dna ? GO:0003677 ... Q02548 11779502
    21429 1k78:I (2.25) BS02 dna ? GO:0003677 ... Q02548 11779502
    21430 1k79:A (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    21431 1k79:A (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    21432 1k79:D (2.4) BS01 dna ? GO:0003700 ... P27577 11779502
    21433 1k79:D (2.4) BS02 dna ? GO:0003700 ... P27577 11779502
    21434 1k7a:A (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    21435 1k7a:A (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    21436 1k7a:D (2.8) BS01 dna ? GO:0003700 ... P27577 11779502
    21437 1k7a:D (2.8) BS02 dna ? GO:0003700 ... P27577 11779502
    21438 1k7d:A (2.15) BS01 GRO 3.5.1.11 GO:0016787 ... P06875 15254299
    21439 1k7d:B (2.15) BS01 CA 3.5.1.11 GO:0016787 ... P06875 15254299
    21440 1k7d:B (2.15) BS02 GRO 3.5.1.11 GO:0016787 ... P06875 15254299 MOAD: Ki=0.47mM
    21441 1k7e:A (2.3) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756456
    21442 1k7e:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    21443 1k7f:A (1.9) BS01 IAV 4.2.1.20 GO:0000162 ... P00929 11756456
    21444 1k7f:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    21445 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21446 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21447 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21448 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21449 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21450 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21451 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    21452 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21453 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21454 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21455 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21456 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21457 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21458 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    21459 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21460 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21461 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21462 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21463 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21464 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21465 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    21466 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21467 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    21468 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    21469 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    21470 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    21471 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    21472 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    21473 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    21474 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    21475 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    21476 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21477 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21478 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21479 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21480 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21481 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21482 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    21483 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    21484 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    21485 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21486 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21487 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21488 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21489 1k7w:C (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21490 1k7w:C (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21491 1k7w:D (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21492 1k7w:D (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    21493 1k7x:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    21494 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    21495 1k81:A (-1.00) BS01 ZN ? GO:0003743 ... Q57562 11980477
    21496 1k82:A (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21497 1k82:A (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21498 1k82:A (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21499 1k82:A (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21500 1k82:B (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21501 1k82:B (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21502 1k82:B (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21503 1k82:B (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21504 1k82:C (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21505 1k82:C (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21506 1k82:C (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21507 1k82:C (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21508 1k82:D (2.1) BS01 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21509 1k82:D (2.1) BS02 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21510 1k82:D (2.1) BS03 dna 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21511 1k82:D (2.1) BS04 ZN 3.2.2.23
    4.2.99.18
    GO:0000703 ... P05523 11912217
    21512 1k83:A (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P04050 11805306
    21513 1k83:A (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    21514 1k83:A (2.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 11805306
    21515 1k83:A (2.8) BS04 MN 2.7.7.6 GO:0000428 ... P04050 11805306
    21516 1k83:B (2.8) BS01 peptide 2.7.7.6 GO:0000428 ... P08518 11805306
    21517 1k83:B (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 11805306
    21518 1k83:C (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 11805306
    21519 1k83:I (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    21520 1k83:I (2.8) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 11805306
    21521 1k83:J (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 11805306
    21522 1k83:L (2.8) BS01 ZN 2.7.7.6 GO:0000428 ... P40422 11805306
    21523 1k8a:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    21524 1k8a:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    21525 1k8a:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    21526 1k8a:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912
    21527 1k8a:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12150912
    21528 1k8a:C (3.0) BS01 rna ? GO:0002181 ... P20276 12150912
    21529 1k8a:C (3.0) BS02 MG ? GO:0002181 ... P20276 12150912
    21530 1k8a:D (3.0) BS01 rna ? GO:0003723 ... P20279 12150912
    21531 1k8a:E (3.0) BS01 rna ? GO:0003723 ... P12735 12150912
    21532 1k8a:F (3.0) BS01 rna ? GO:0000049 ... P14124 12150912
    21533 1k8a:F (3.0) BS02 rna ? GO:0000049 ... P14124 12150912
    21534 1k8a:G (3.0) BS01 rna ? GO:0002181 ... P14135 12150912
    21535 1k8a:H (3.0) BS01 rna ? GO:0001682 ... P12743 12150912
    21536 1k8a:J (3.0) BS01 rna ? GO:0000027 ... P60617 12150912
    21537 1k8a:K (3.0) BS01 rna ? GO:0003729 ... P29198 12150912
    21538 1k8a:L (3.0) BS01 rna ? GO:0003735 ... P22450 12150912
    21539 1k8a:M (3.0) BS01 rna ? GO:0003735 ... P12737 12150912
    21540 1k8a:N (3.0) BS01 rna ? GO:0002181 ... P60618 12150912
    21541 1k8a:O (3.0) BS01 rna ? GO:0000027 ... P14123 12150912
    21542 1k8a:O (3.0) BS02 rna ? GO:0000027 ... P14123 12150912
    21543 1k8a:P (3.0) BS01 rna ? GO:0003723 ... P12733 12150912
    21544 1k8a:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12150912
    21545 1k8a:R (3.0) BS01 rna ? GO:0003735 ... P12734 12150912
    21546 1k8a:R (3.0) BS02 rna ? GO:0003735 ... P12734 12150912
    21547 1k8a:S (3.0) BS01 rna ? GO:0002181 ... P10970 12150912
    21548 1k8a:T (3.0) BS01 rna ? GO:0000027 ... P12732 12150912
    21549 1k8a:U (3.0) BS01 rna ? GO:0002181 ... P10972 12150912
    21550 1k8a:U (3.0) BS02 MG ? GO:0002181 ... P10972 12150912
    21551 1k8a:V (3.0) BS01 rna ? GO:0003735 ... P14116 12150912
    21552 1k8a:W (3.0) BS01 rna ? GO:0003735 ... P10971 12150912
    21553 1k8a:X (3.0) BS01 rna ? GO:0000463 ... P14121 12150912
    21554 1k8a:X (3.0) BS02 rna ? GO:0000463 ... P14121 12150912
    21555 1k8a:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12150912
    21556 1k8a:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12150912
    21557 1k8a:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12150912
    21558 1k8c:A (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    21559 1k8c:B (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    21560 1k8c:C (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    21561 1k8c:D (2.1) BS01 NAP 1.1.1.307 GO:0004032 ... O74237 12102621
    21562 1k8g:A (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    21563 1k8g:B (2.6) BS01 dna ? GO:0000723 ... P29549 11743727
    21564 1k8q:A (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    21565 1k8q:B (2.7) BS01 C11 3.1.1.3 GO:0004806 ... P80035 11689574
    21566 1k8r:A (3.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 11709168
    21567 1k8r:A (3.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 11709168
    21568 1k8w:A (1.85) BS01 rna 5.4.99.25 GO:0000049 ... P60340 11779468
    21569 1k8x:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 12460570
    21570 1k8y:B (1.5) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    21571 1k8z:A (1.7) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756454
    21572 1k8z:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756454
    21573 1k90:D (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21574 1k90:D (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21575 1k90:E (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21576 1k90:E (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21577 1k90:F (2.75) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21578 1k90:F (2.75) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21579 1k93:D (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21580 1k93:D (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21581 1k93:E (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21582 1k93:E (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21583 1k93:F (2.95) BS01 CA ? GO:0000086 ... P0DP23 11807546
    21584 1k93:F (2.95) BS02 CA ? GO:0000086 ... P0DP23 11807546
    21585 1k96:A (1.44) BS01 CA ? GO:0001726 ... P06703 11937060
    21586 1k96:A (1.44) BS02 CA ? GO:0001726 ... P06703 11937060
    21587 1k97:A (2.0) BS01 ASP 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    21588 1k97:A (2.0) BS02 CIR 6.3.4.5 GO:0000050 ... P0A6E4 11738042
    21589 1k98:A (3.75) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    21590 1k9e:A (1.85) BS01 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    21591 1k9f:A (1.75) BS01 XYP 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    21592 1k9f:A (1.75) BS02 GCV 3.2.1.131 GO:0004553 ... Q09LY5 14573597
    21593 1k9k:A (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    21594 1k9k:A (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    21595 1k9k:B (1.76) BS01 CA ? GO:0001726 ... P06703 11937060
    21596 1k9k:B (1.76) BS02 CA ? GO:0001726 ... P06703 11937060
    21597 1k9m:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12150912
    21598 1k9m:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12150912
    21599 1k9m:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12150912
    21600 1k9m:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12150912

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218