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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    19601 1m18:D (2.45) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19602 1m18:D (2.45) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19603 1m18:E (2.45) BS01 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19604 1m18:E (2.45) BS02 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19605 1m18:F (2.45) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19606 1m18:F (2.45) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19607 1m18:G (2.45) BS01 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19608 1m18:G (2.45) BS02 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19609 1m18:H (2.45) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19610 1m18:H (2.45) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19611 1m19:A (2.3) BS01 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19612 1m19:A (2.3) BS02 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19613 1m19:B (2.3) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19614 1m19:B (2.3) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19615 1m19:C (2.3) BS01 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19616 1m19:C (2.3) BS02 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19617 1m19:D (2.3) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19618 1m19:D (2.3) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19619 1m19:E (2.3) BS01 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19620 1m19:E (2.3) BS02 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19621 1m19:F (2.3) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19622 1m19:F (2.3) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19623 1m19:G (2.3) BS01 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19624 1m19:G (2.3) BS02 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19625 1m19:H (2.3) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19626 1m19:H (2.3) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19627 1m1a:A (2.65) BS01 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19628 1m1a:A (2.65) BS02 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19629 1m1a:B (2.65) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19630 1m1a:B (2.65) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19631 1m1a:C (2.65) BS01 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19632 1m1a:C (2.65) BS02 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19633 1m1a:D (2.65) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19634 1m1a:D (2.65) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19635 1m1a:E (2.65) BS01 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19636 1m1a:E (2.65) BS02 dna ? GO:0000786 ... P02302 12559907 PDBbind: Kd=0.6uM
    19637 1m1a:F (2.65) BS01 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19638 1m1a:F (2.65) BS02 dna ? GO:0000786 ... P62799 12559907 PDBbind: Kd=0.6uM
    19639 1m1a:G (2.65) BS01 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19640 1m1a:G (2.65) BS02 dna ? GO:0000786 ... P06897 12559907 PDBbind: Kd=0.6uM
    19641 1m1a:H (2.65) BS01 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19642 1m1a:H (2.65) BS02 dna ? GO:0000786 ... P02281 12559907 PDBbind: Kd=0.6uM
    19643 1m1j:B (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    19644 1m1j:B (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    19645 1m1j:C (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    19646 1m1j:C (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    19647 1m1j:E (2.7) BS01 peptide ? GO:0005102 ... Q02020 11601975
    19648 1m1j:E (2.7) BS02 CA ? GO:0005102 ... Q02020 11601975
    19649 1m1j:F (2.7) BS01 peptide ? GO:0005102 ... O93568 11601975
    19650 1m1j:F (2.7) BS02 CA ? GO:0005102 ... O93568 11601975
    19651 1m1k:1 (3.2) BS01 rna ? GO:0003735 ... P60619 12150912
    19652 1m1k:1 (3.2) BS02 MG ? GO:0003735 ... P60619 12150912
    19653 1m1k:2 (3.2) BS01 rna ? GO:0003723 ... P32410 12150912
    19654 1m1k:3 (3.2) BS01 rna ? GO:0003735 ... P22452 12150912
    19655 1m1k:4 (3.2) BS01 rna ? GO:0000049 ... P32411 12150912
    19656 1m1k:4 (3.2) BS02 MG ? GO:0000049 ... P32411 12150912
    19657 1m1k:C (3.2) BS01 rna ? GO:0002181 ... P20276 12150912
    19658 1m1k:C (3.2) BS02 MG ? GO:0002181 ... P20276 12150912
    19659 1m1k:D (3.2) BS01 rna ? GO:0003723 ... P20279 12150912
    19660 1m1k:E (3.2) BS01 rna ? GO:0003723 ... P12735 12150912
    19661 1m1k:F (3.2) BS01 rna ? GO:0000049 ... P14124 12150912
    19662 1m1k:F (3.2) BS02 rna ? GO:0000049 ... P14124 12150912
    19663 1m1k:G (3.2) BS01 rna ? GO:0002181 ... P14135 12150912
    19664 1m1k:H (3.2) BS01 rna ? GO:0001682 ... P12743 12150912
    19665 1m1k:J (3.2) BS01 rna ? GO:0000027 ... P60617 12150912
    19666 1m1k:K (3.2) BS01 rna ? GO:0003729 ... P29198 12150912
    19667 1m1k:L (3.2) BS01 rna ? GO:0003735 ... P22450 12150912
    19668 1m1k:M (3.2) BS01 rna ? GO:0003735 ... P12737 12150912
    19669 1m1k:N (3.2) BS01 rna ? GO:0002181 ... P60618 12150912
    19670 1m1k:O (3.2) BS01 rna ? GO:0000027 ... P14123 12150912
    19671 1m1k:O (3.2) BS02 rna ? GO:0000027 ... P14123 12150912
    19672 1m1k:P (3.2) BS01 rna ? GO:0003723 ... P12733 12150912
    19673 1m1k:Q (3.2) BS01 rna ? GO:0003723 ... P14119 12150912
    19674 1m1k:R (3.2) BS01 rna ? GO:0003735 ... P12734 12150912
    19675 1m1k:R (3.2) BS02 rna ? GO:0003735 ... P12734 12150912
    19676 1m1k:S (3.2) BS01 rna ? GO:0002181 ... P10970 12150912
    19677 1m1k:T (3.2) BS01 rna ? GO:0000027 ... P12732 12150912
    19678 1m1k:U (3.2) BS01 rna ? GO:0002181 ... P10972 12150912
    19679 1m1k:U (3.2) BS02 MG ? GO:0002181 ... P10972 12150912
    19680 1m1k:V (3.2) BS01 rna ? GO:0003735 ... P14116 12150912
    19681 1m1k:W (3.2) BS01 rna ? GO:0003735 ... P10971 12150912
    19682 1m1k:X (3.2) BS01 rna ? GO:0000463 ... P14121 12150912
    19683 1m1k:X (3.2) BS02 rna ? GO:0000463 ... P14121 12150912
    19684 1m1k:Y (3.2) BS01 rna ? GO:0002181 ... P18138 12150912
    19685 1m1k:Z (3.2) BS01 rna ? GO:0000166 ... P12736 12150912
    19686 1m1k:Z (3.2) BS02 MG ? GO:0000166 ... P12736 12150912
    19687 1m1n:A (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    19688 1m1n:A (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    19689 1m1n:B (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19690 1m1n:B (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    19691 1m1n:B (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19692 1m1n:C (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    19693 1m1n:C (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    19694 1m1n:D (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19695 1m1n:D (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19696 1m1n:D (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    19697 1m1n:E (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    19698 1m1n:E (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    19699 1m1n:F (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19700 1m1n:F (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    19701 1m1n:F (1.16) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19702 1m1n:G (1.16) BS01 CFN 1.18.6.1 GO:0005524 ... P07328 12215645
    19703 1m1n:G (1.16) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12215645
    19704 1m1n:H (1.16) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19705 1m1n:H (1.16) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12215645
    19706 1m1n:H (1.16) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12215645
    19707 1m1o:A (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    19708 1m1o:B (1.95) BS01 CAA 2.3.1.9 GO:0003985 ... P07097 12501183
    19709 1m1p:A (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19710 1m1p:A (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19711 1m1p:A (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19712 1m1p:A (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19713 1m1p:B (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19714 1m1p:B (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19715 1m1p:B (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19716 1m1p:B (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19717 1m1p:C (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19718 1m1p:C (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19719 1m1p:C (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19720 1m1p:C (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19721 1m1p:D (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19722 1m1p:D (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19723 1m1p:D (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19724 1m1p:D (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19725 1m1p:E (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19726 1m1p:E (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19727 1m1p:E (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19728 1m1p:E (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19729 1m1p:E (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    19730 1m1p:F (1.55) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19731 1m1p:F (1.55) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19732 1m1p:F (1.55) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19733 1m1p:F (1.55) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19734 1m1p:F (1.55) BS05 HEC ? GO:0042597 ... Q8EDL6 12080059
    19735 1m1q:A (0.97) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19736 1m1q:A (0.97) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19737 1m1q:A (0.97) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19738 1m1q:A (0.97) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19739 1m1r:A (1.02) BS01 HEC ? GO:0042597 ... Q8EDL6 12080059
    19740 1m1r:A (1.02) BS02 HEC ? GO:0042597 ... Q8EDL6 12080059
    19741 1m1r:A (1.02) BS03 HEC ? GO:0042597 ... Q8EDL6 12080059
    19742 1m1r:A (1.02) BS04 HEC ? GO:0042597 ... Q8EDL6 12080059
    19743 1m1x:A (3.3) BS01 MN ? GO:0001525 ... P06756 11884718
    19744 1m1x:A (3.3) BS02 MN ? GO:0001525 ... P06756 11884718
    19745 1m1x:A (3.3) BS03 MN ? GO:0001525 ... P06756 11884718
    19746 1m1x:A (3.3) BS04 MN ? GO:0001525 ... P06756 11884718
    19747 1m1x:A (3.3) BS05 MN ? GO:0001525 ... P06756 11884718
    19748 1m1x:B (3.3) BS01 MN ? GO:0001618 ... P05106 11884718
    19749 1m1y:A (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    19750 1m1y:A (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    19751 1m1y:B (3.2) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    19752 1m1y:B (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19753 1m1y:B (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19754 1m1y:C (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    19755 1m1y:C (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    19756 1m1y:D (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19757 1m1y:D (3.2) BS02 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19758 1m1y:D (3.2) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    19759 1m1y:I (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    19760 1m1y:I (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    19761 1m1y:J (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19762 1m1y:J (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    19763 1m1y:J (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19764 1m1y:K (3.2) BS01 CFM 1.18.6.1 GO:0005524 ... P07328 12501184
    19765 1m1y:K (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 12501184
    19766 1m1y:L (3.2) BS01 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19767 1m1y:L (3.2) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 12501184
    19768 1m1y:L (3.2) BS03 CA 1.18.6.1 GO:0005524 ... P07329 12501184
    19769 1m26:A (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    19770 1m26:A (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    19771 1m26:A (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    19772 1m26:C (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    19773 1m26:C (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    19774 1m26:C (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    19775 1m26:E (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    19776 1m26:E (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    19777 1m26:E (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    19778 1m26:G (1.62) BS01 peptide ? GO:0005575 ... P18670 12206779
    19779 1m26:G (1.62) BS02 peptide ? GO:0005575 ... P18670 12206779
    19780 1m26:G (1.62) BS03 peptide ? GO:0005575 ... P18670 12206779
    19781 1m27:A (2.5) BS01 peptide ? GO:0005737 ... O60880 12545174
    19782 1m2g:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19783 1m2g:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    19784 1m2h:A (1.8) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19785 1m2h:A (1.8) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    19786 1m2j:A (1.7) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19787 1m2j:A (1.7) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    19788 1m2k:A (1.47) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19789 1m2k:A (1.47) BS02 APR 2.3.1.286 GO:0005737 ... O28597 12091395
    19790 1m2n:A (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19791 1m2n:A (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    19792 1m2n:B (2.6) BS01 ZN 2.3.1.286 GO:0005737 ... O28597 12091395
    19793 1m2n:B (2.6) BS02 OAD 2.3.1.286 GO:0005737 ... O28597 12091395
    19794 1m2o:A (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    19795 1m2o:A (2.5) BS02 GNP ? GO:0000139 ... P15303 12239560
    19796 1m2o:B (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    19797 1m2o:B (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    19798 1m2o:C (2.5) BS01 ZN ? GO:0000139 ... P15303 12239560
    19799 1m2o:D (2.5) BS01 MG 3.6.5.- GO:0000139 ... P20606 12239560
    19800 1m2o:D (2.5) BS02 GNP 3.6.5.- GO:0000139 ... P20606 12239560
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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