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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16401 1k3i:A (1.4) BS01 GLC 1.1.3.9 GO:0005576 ... P0CS93 11698678
    16402 1k3i:A (1.4) BS02 CA 1.1.3.9 GO:0005576 ... P0CS93 11698678
    16403 1k3i:A (1.4) BS03 CA 1.1.3.9 GO:0005576 ... P0CS93 11698678
    16404 1k3l:A (1.5) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16405 1k3l:A (1.5) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16406 1k3l:B (1.5) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16407 1k3l:B (1.5) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16408 1k3m:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 11742127
    16409 1k3t:C (1.95) BS01 BRZ 1.2.1.12 GO:0004365 ... P22513 12044862 MOAD: ic50=64uM
    PDBbind: -logKd/Ki=4.19, IC50=64uM
    16410 1k3u:A (1.7) BS01 IAD 4.2.1.20 GO:0000162 ... P00929 11756456
    16411 1k3u:B (1.7) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    16412 1k3y:A (1.3) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16413 1k3y:A (1.3) BS02 GOL 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16414 1k3y:A (1.3) BS03 GOL 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16415 1k3y:A (1.3) BS04 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16416 1k3y:B (1.3) BS01 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16417 1k3y:B (1.3) BS02 GTX 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16418 1k3y:B (1.3) BS03 GOL 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 12211029
    16419 1k49:A (1.5) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16420 1k49:A (1.5) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16421 1k49:A (1.5) BS03 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16422 1k4g:A (1.7) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11921407
    16423 1k4g:A (1.7) BS02 AIQ 2.4.2.29 GO:0002099 ... P28720 11921407 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    16424 1k4h:A (1.8) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 11921407
    16425 1k4h:A (1.8) BS02 APQ 2.4.2.29 GO:0002099 ... P28720 11921407 MOAD: Ki=7.7uM
    PDBbind: -logKd/Ki=5.11, Ki=7.7uM
    16426 1k4i:A (0.98) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16427 1k4i:A (0.98) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16428 1k4i:A (0.98) BS03 MG 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16429 1k4l:A (1.6) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16430 1k4l:A (1.6) BS02 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16431 1k4l:A (1.6) BS03 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16432 1k4o:A (1.1) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16433 1k4o:A (1.1) BS02 MN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16434 1k4o:A (1.1) BS03 GOL 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16435 1k4p:A (1.0) BS01 SO4 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16436 1k4p:A (1.0) BS02 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16437 1k4p:A (1.0) BS03 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16438 1k4p:A (1.0) BS04 ZN 4.1.99.12 GO:0003824 ... Q8TG90 11827524
    16439 1k4s:A (3.2) BS01 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16440 1k4s:A (3.2) BS02 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16441 1k4s:A (3.2) BS03 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16442 1k4t:A (2.1) BS01 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16443 1k4t:A (2.1) BS02 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16444 1k4t:A (2.1) BS03 dna 5.6.2.1 GO:0003677 ... P11387 12426403
    16445 1k4t:A (2.1) BS04 TTG 5.6.2.1 GO:0003677 ... P11387 12426403
    16446 1k4v:A (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    16447 1k4v:A (1.53) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 11592969
    16448 1k4v:B (1.53) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11592969
    16449 1k4v:B (1.53) BS02 UDP 2.4.1.87 GO:0005975 ... P14769 11592969
    16450 1k4w:A (1.9) BS01 peptide ? GO:0003677 ... P45446 11689423
    16451 1k4y:A (2.5) BS01 4PN 3.1.1.1 GO:0005783 ... P12337 11967565
    16452 1k5d:A (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16453 1k5d:A (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    16454 1k5d:D (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16455 1k5d:D (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    16456 1k5d:G (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16457 1k5d:G (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    16458 1k5d:J (2.7) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16459 1k5d:J (2.7) BS02 GNP 3.6.5.- GO:0000054 ... P62826 11832950
    16460 1k5g:A (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16461 1k5g:A (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    16462 1k5g:A (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    16463 1k5g:D (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16464 1k5g:D (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    16465 1k5g:D (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    16466 1k5g:G (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16467 1k5g:G (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    16468 1k5g:G (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    16469 1k5g:J (3.1) BS01 MG 3.6.5.- GO:0000054 ... P62826 11832950
    16470 1k5g:J (3.1) BS02 GDP 3.6.5.- GO:0000054 ... P62826 11832950
    16471 1k5g:J (3.1) BS03 AF3 3.6.5.- GO:0000054 ... P62826 11832950
    16472 1k5w:A (-1.00) BS01 CA ? GO:0016020 ... P21707 11754837
    16473 1k5w:A (-1.00) BS02 CA ? GO:0016020 ... P21707 11754837
    16474 1k63:A (1.8) BS01 BRP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    16475 1k6d:B (1.9) BS01 MG 2.8.3.8 GO:0005737 ... P76458 12454473
    16476 1k6e:A (1.85) BS01 1BP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    16477 1k6e:A (1.85) BS02 1BP 3.8.1.5 GO:0003824 ... D4Z2G1 12939138
    16478 1k6l:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    16479 1k6l:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    16480 1k6l:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    16481 1k6l:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    16482 1k6l:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    16483 1k6l:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    16484 1k6l:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    16485 1k6l:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    16486 1k6l:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    16487 1k6l:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    16488 1k6l:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    16489 1k6l:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    16490 1k6l:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    16491 1k6l:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    16492 1k6l:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    16493 1k6m:A (2.4) BS01 AGS 2.7.1.105
    3.1.3.46
    GO:0003824 ... P16118 12379646
    16494 1k6m:B (2.4) BS01 AGS 2.7.1.105
    3.1.3.46
    GO:0003824 ... P16118 12379646
    16495 1k6n:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    16496 1k6n:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    16497 1k6n:L (3.1) BS03 BPH ? GO:0009772 ... P0C0Y8 11993994
    16498 1k6n:L (3.1) BS04 U10 ? GO:0009772 ... P0C0Y8 11993994
    16499 1k6n:L (3.1) BS05 FE ? GO:0009772 ... P0C0Y8 11993994
    16500 1k6n:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    16501 1k6n:L (3.1) BS07 BPH ? GO:0009772 ... P0C0Y8 11993994
    16502 1k6n:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    16503 1k6n:M (3.1) BS02 BPH ? GO:0009772 ... P0C0Y9 11993994
    16504 1k6n:M (3.1) BS03 FE ? GO:0009772 ... P0C0Y9 11993994
    16505 1k6n:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    16506 1k6n:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    16507 1k6n:M (3.1) BS06 BPH ? GO:0009772 ... P0C0Y9 11993994
    16508 1k6n:M (3.1) BS07 U10 ? GO:0009772 ... P0C0Y9 11993994
    16509 1k6n:M (3.1) BS08 SPN ? GO:0009772 ... P0C0Y9 11993994
    16510 1k6w:A (1.75) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    16511 1k6x:A (1.5) BS01 NAD ? GO:0001081 ... Q5AU62 11726498
    16512 1k70:A (1.8) BS01 FE 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    16513 1k70:A (1.8) BS02 HPY 3.5.4.-
    3.5.4.1
    GO:0004131 ... P25524 11812140
    16514 1k73:1 (3.01) BS01 rna ? GO:0003735 ... P60619 12860128
    16515 1k73:2 (3.01) BS01 rna ? GO:0003723 ... P32410 12860128
    16516 1k73:3 (3.01) BS01 rna ? GO:0003735 ... P22452 12860128
    16517 1k73:4 (3.01) BS01 rna ? GO:0000049 ... P32411 12860128
    16518 1k73:4 (3.01) BS02 MG ? GO:0000049 ... P32411 12860128
    16519 1k73:C (3.01) BS01 rna ? GO:0002181 ... P20276 12860128
    16520 1k73:C (3.01) BS02 MG ? GO:0002181 ... P20276 12860128
    16521 1k73:D (3.01) BS01 rna ? GO:0003723 ... P20279 12860128
    16522 1k73:E (3.01) BS01 rna ? GO:0003723 ... P12735 12860128
    16523 1k73:F (3.01) BS01 rna ? GO:0000049 ... P14124 12860128
    16524 1k73:F (3.01) BS02 rna ? GO:0000049 ... P14124 12860128
    16525 1k73:G (3.01) BS01 rna ? GO:0002181 ... P14135 12860128
    16526 1k73:H (3.01) BS01 rna ? GO:0001682 ... P12743 12860128
    16527 1k73:J (3.01) BS01 rna ? GO:0000027 ... P60617 12860128
    16528 1k73:K (3.01) BS01 rna ? GO:0003729 ... P29198 12860128
    16529 1k73:L (3.01) BS01 rna ? GO:0003735 ... P22450 12860128
    16530 1k73:M (3.01) BS01 rna ? GO:0003735 ... P12737 12860128
    16531 1k73:N (3.01) BS01 rna ? GO:0002181 ... P60618 12860128
    16532 1k73:O (3.01) BS01 rna ? GO:0000027 ... P14123 12860128
    16533 1k73:O (3.01) BS02 rna ? GO:0000027 ... P14123 12860128
    16534 1k73:P (3.01) BS01 rna ? GO:0003723 ... P12733 12860128
    16535 1k73:Q (3.01) BS01 rna ? GO:0003723 ... P14119 12860128
    16536 1k73:R (3.01) BS01 rna ? GO:0003735 ... P12734 12860128
    16537 1k73:R (3.01) BS02 rna ? GO:0003735 ... P12734 12860128
    16538 1k73:S (3.01) BS01 rna ? GO:0002181 ... P10970 12860128
    16539 1k73:T (3.01) BS01 rna ? GO:0000027 ... P12732 12860128
    16540 1k73:U (3.01) BS01 rna ? GO:0002181 ... P10972 12860128
    16541 1k73:U (3.01) BS02 MG ? GO:0002181 ... P10972 12860128
    16542 1k73:V (3.01) BS01 rna ? GO:0003735 ... P14116 12860128
    16543 1k73:W (3.01) BS01 rna ? GO:0003735 ... P10971 12860128
    16544 1k73:X (3.01) BS01 rna ? GO:0000463 ... P14121 12860128
    16545 1k73:X (3.01) BS02 rna ? GO:0000463 ... P14121 12860128
    16546 1k73:Y (3.01) BS01 rna ? GO:0002181 ... P18138 12860128
    16547 1k73:Z (3.01) BS01 rna ? GO:0000166 ... P12736 12860128
    16548 1k73:Z (3.01) BS02 MG ? GO:0000166 ... P12736 12860128
    16549 1k74:A (2.3) BS01 peptide ? GO:0003677 ... P19793 11698662
    16550 1k74:A (2.3) BS02 9CR ? GO:0003677 ... P19793 11698662 BindingDB: EC50=100nM, Ki=583nM, IC50=32nM, Kd=240nM
    16551 1k74:D (2.3) BS01 peptide ? GO:0003677 ... P37231 11698662
    16552 1k74:D (2.3) BS02 544 ? GO:0003677 ... P37231 11698662 BindingDB: EC50=0.280000nM
    16553 1k7e:A (2.3) BS01 IAG 4.2.1.20 GO:0000162 ... P00929 11756456
    16554 1k7e:B (2.3) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    16555 1k7f:A (1.9) BS01 IAV 4.2.1.20 GO:0000162 ... P00929 11756456
    16556 1k7f:B (1.9) BS01 PLP 4.2.1.20 GO:0000162 ... P0A2K1 11756456
    16557 1k7g:A (2.0) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16558 1k7g:A (2.0) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16559 1k7g:A (2.0) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16560 1k7g:A (2.0) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16561 1k7g:A (2.0) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16562 1k7g:A (2.0) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16563 1k7g:A (2.0) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    16564 1k7g:A (2.0) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16565 1k7h:A (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16566 1k7h:A (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16567 1k7h:A (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16568 1k7h:B (1.92) BS01 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16569 1k7h:B (1.92) BS02 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16570 1k7h:B (1.92) BS03 ZN 3.1.3.1 GO:0004035 ... Q9BHT8 12083516
    16571 1k7i:A (1.59) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16572 1k7i:A (1.59) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16573 1k7i:A (1.59) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16574 1k7i:A (1.59) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16575 1k7i:A (1.59) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16576 1k7i:A (1.59) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16577 1k7i:A (1.59) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    16578 1k7i:A (1.59) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16579 1k7l:A (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    16580 1k7l:A (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    16581 1k7l:C (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    16582 1k7l:C (2.5) BS02 peptide ? GO:0003677 ... Q07869 11698662
    16583 1k7l:C (2.5) BS03 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    16584 1k7l:E (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    16585 1k7l:E (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    16586 1k7l:G (2.5) BS01 peptide ? GO:0003677 ... Q07869 11698662
    16587 1k7l:G (2.5) BS02 544 ? GO:0003677 ... Q07869 11698662 BindingDB: EC50=240nM
    16588 1k7q:A (1.8) BS01 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16589 1k7q:A (1.8) BS02 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16590 1k7q:A (1.8) BS03 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16591 1k7q:A (1.8) BS04 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16592 1k7q:A (1.8) BS05 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16593 1k7q:A (1.8) BS06 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16594 1k7q:A (1.8) BS07 ZN 3.4.24.40 GO:0004222 ... P16317 11718553
    16595 1k7q:A (1.8) BS08 CA 3.4.24.40 GO:0004222 ... P16317 11718553
    16596 1k7s:N (2.6) BS01 ALB ? GO:0005515 ... P07822 11805094
    16597 1k7w:A (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16598 1k7w:A (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16599 1k7w:B (1.96) BS01 AS1 4.3.2.1 GO:0003824 ... P24058 11698398
    16600 1k7w:B (1.96) BS02 AS1 4.3.2.1 GO:0003824 ... P24058 11698398

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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