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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15201 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    15202 1jgx:M (3.01) BS03 BPH ? GO:0009772 ... P0C0Y9 11526320
    15203 1jgx:M (3.01) BS04 FE ? GO:0009772 ... P0C0Y9 11526320
    15204 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    15205 1jgx:M (3.01) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    15206 1jgx:M (3.01) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    15207 1jgx:M (3.01) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    15208 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    15209 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    15210 1jgy:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    15211 1jgy:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    15212 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    15213 1jgy:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    15214 1jgy:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    15215 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    15216 1jgy:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    15217 1jgy:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    15218 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    15219 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    15220 1jgy:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    15221 1jgy:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    15222 1jgy:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    15223 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    15224 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    15225 1jgz:L (2.7) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    15226 1jgz:L (2.7) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    15227 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    15228 1jgz:L (2.7) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    15229 1jgz:L (2.7) BS07 U10 ? GO:0009772 ... P0C0Y8 11526320
    15230 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    15231 1jgz:M (2.7) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    15232 1jgz:M (2.7) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    15233 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    15234 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    15235 1jgz:M (2.7) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    15236 1jgz:M (2.7) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    15237 1jgz:M (2.7) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    15238 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    15239 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    15240 1jh0:L (3.5) BS03 BPH ? GO:0009772 ... P0C0Y8 11526320
    15241 1jh0:L (3.5) BS04 FE ? GO:0009772 ... P0C0Y8 11526320
    15242 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    15243 1jh0:L (3.5) BS06 BPH ? GO:0009772 ... P0C0Y8 11526320
    15244 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    15245 1jh0:M (3.5) BS02 BPH ? GO:0009772 ... P0C0Y9 11526320
    15246 1jh0:M (3.5) BS03 FE ? GO:0009772 ... P0C0Y9 11526320
    15247 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    15248 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    15249 1jh0:M (3.5) BS06 BPH ? GO:0009772 ... P0C0Y9 11526320
    15250 1jh0:M (3.5) BS07 U10 ? GO:0009772 ... P0C0Y9 11526320
    15251 1jh0:M (3.5) BS08 SPO ? GO:0009772 ... P0C0Y9 11526320
    15252 1jh1:A (2.7) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    15253 1jh1:A (2.7) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11563922
    15254 1jh1:A (2.7) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    15255 1jh1:A (2.7) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11563922
    15256 1jh1:A (2.7) BS05 JST 3.4.24.34 GO:0004222 ... P22894 11563922 PDBbind: -logKd/Ki=4.39, Ki=41uM
    15257 1jh7:A (2.4) BS01 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    15258 1jh7:A (2.4) BS02 UVC 3.1.4.37 GO:0004112 ... O04147 11694509
    15259 1jh9:A (2.55) BS01 dna ? GO:0000976 ... P0ACP7 11781089 PDBbind: Kd=2nM
    15260 1jh9:A (2.55) BS02 HPA ? GO:0000976 ... P0ACP7 11781089
    15261 1jhg:A (1.3) BS01 TRP ? GO:0003677 ... P0A881 8946848
    15262 1jhn:A (2.9) BS01 CA ? GO:0005509 ... P24643 11583625
    15263 1ji1:A (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15264 1ji1:A (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15265 1ji1:A (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15266 1ji1:B (1.6) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15267 1ji1:B (1.6) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15268 1ji1:B (1.6) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 12051850
    15269 1ji3:A (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    15270 1ji3:A (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    15271 1ji3:B (2.2) BS01 CA 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    15272 1ji3:B (2.2) BS02 ZN 3.1.1.3 GO:0005576 ... Q9L6D3 12417199
    15273 1ji4:A (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15274 1ji4:A (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15275 1ji4:B (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15276 1ji4:B (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15277 1ji4:C (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15278 1ji4:C (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15279 1ji4:D (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15280 1ji4:D (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15281 1ji4:E (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15282 1ji4:E (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15283 1ji4:F (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15284 1ji4:F (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15285 1ji4:G (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15286 1ji4:G (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15287 1ji4:H (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15288 1ji4:H (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15289 1ji4:I (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15290 1ji4:I (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15291 1ji4:J (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15292 1ji4:J (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15293 1ji4:K (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15294 1ji4:K (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15295 1ji4:L (2.52) BS01 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15296 1ji4:L (2.52) BS02 FE 1.16.-.- GO:0005737 ... P43313 12368104
    15297 1ji5:A (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    15298 1ji5:B (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    15299 1ji5:C (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    15300 1ji5:D (2.5) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ2 11836250
    15301 1jia:A (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    15302 1jia:B (2.13) BS01 CA 3.1.1.4 GO:0004623 ... O42187 9761847
    15303 1jid:A (1.8) BS01 rna ? GO:0006614 ... P09132 11641499
    15304 1jig:A (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15305 1jig:A (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15306 1jig:B (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15307 1jig:B (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15308 1jig:C (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15309 1jig:C (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15310 1jig:D (1.46) BS01 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15311 1jig:D (1.46) BS02 FE 1.16.-.- GO:0005737 ... Q8RPQ1 11836250
    15312 1jii:A (3.2) BS01 383 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.00, IC50=1nM
    15313 1jij:A (3.2) BS01 629 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=8.52, IC50=3nM
    15314 1jik:A (2.8) BS01 545 6.1.1.1 GO:0000166 ... A6QHR2 11567092 PDBbind: -logKd/Ki=9.70, IC50=0.2nM
    15315 1jil:A (2.2) BS01 485 6.1.1.1 GO:0000166 ... A6QHR2 11567092 MOAD: ic50=4nM
    PDBbind: -logKd/Ki=8.40, IC50=4nM
    15316 1jim:A (2.31) BS01 ICU 3.4.21.36 GO:0004252 ... P00772 N/A
    15317 1jin:A (2.3) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    15318 1jin:A (2.3) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    15319 1jio:A (2.1) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    15320 1jio:A (2.1) BS02 DEB 1.14.15.35 GO:0004497 ... Q00441 11469860
    15321 1jip:A (2.0) BS01 HEM 1.14.15.35 GO:0004497 ... Q00441 11469860
    15322 1jip:A (2.0) BS02 KTN 1.14.15.35 GO:0004497 ... Q00441 11469860
    15323 1jir:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    15324 1jir:A (2.0) BS02 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    15325 1jir:A (2.0) BS03 AML 3.4.21.4 GO:0004175 ... P00760 N/A
    15326 1jiw:P (1.74) BS01 ZN 3.4.24.40 GO:0001869 ... Q03023 11445573
    15327 1jiw:P (1.74) BS02 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15328 1jiw:P (1.74) BS03 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15329 1jiw:P (1.74) BS04 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15330 1jiw:P (1.74) BS05 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15331 1jiw:P (1.74) BS06 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15332 1jiw:P (1.74) BS07 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15333 1jiw:P (1.74) BS08 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15334 1jiw:P (1.74) BS09 CA 3.4.24.40 GO:0001869 ... Q03023 11445573
    15335 1jiz:A (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    15336 1jiz:A (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    15337 1jiz:A (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15338 1jiz:A (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15339 1jiz:A (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15340 1jiz:A (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929 PDBbind: -logKd/Ki=8.70, IC50=2.0nM
    15341 1jiz:B (2.6) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    15342 1jiz:B (2.6) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 11575929
    15343 1jiz:B (2.6) BS03 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15344 1jiz:B (2.6) BS04 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15345 1jiz:B (2.6) BS05 CA 3.4.24.65 GO:0004222 ... P39900 11575929
    15346 1jiz:B (2.6) BS06 CGS 3.4.24.65 GO:0004222 ... P39900 11575929
    15347 1jj0:A (1.9) BS01 GLC 3.2.1.17 GO:0003796 ... P00698 11679726
    15348 1jj0:A (1.9) BS02 FRU 3.2.1.17 GO:0003796 ... P00698 11679726
    15349 1jj2:1 (2.4) BS01 rna ? GO:0003735 ... P22452 11483524
    15350 1jj2:2 (2.4) BS01 rna ? GO:0000049 ... P32411 11483524
    15351 1jj2:2 (2.4) BS02 MG ? GO:0000049 ... P32411 11483524
    15352 1jj2:A (2.4) BS01 rna ? GO:0002181 ... P20276 11483524
    15353 1jj2:A (2.4) BS02 MG ? GO:0002181 ... P20276 11483524
    15354 1jj2:B (2.4) BS01 rna ? GO:0003723 ... P20279 11483524
    15355 1jj2:C (2.4) BS01 rna ? GO:0003723 ... P12735 11483524
    15356 1jj2:D (2.4) BS01 rna ? GO:0000049 ... P14124 11483524
    15357 1jj2:D (2.4) BS02 rna ? GO:0000049 ... P14124 11483524
    15358 1jj2:E (2.4) BS01 rna ? GO:0002181 ... P14135 11483524
    15359 1jj2:F (2.4) BS01 rna ? GO:0001682 ... P12743 11483524
    15360 1jj2:H (2.4) BS01 rna ? GO:0000027 ... P60617 11483524
    15361 1jj2:I (2.4) BS01 rna ? GO:0003729 ... P29198 11483524
    15362 1jj2:J (2.4) BS01 rna ? GO:0003735 ... P22450 11483524
    15363 1jj2:K (2.4) BS01 rna ? GO:0003735 ... P12737 11483524
    15364 1jj2:L (2.4) BS01 rna ? GO:0002181 ... P60618 11483524
    15365 1jj2:M (2.4) BS01 rna ? GO:0000027 ... P14123 11483524
    15366 1jj2:M (2.4) BS02 rna ? GO:0000027 ... P14123 11483524
    15367 1jj2:N (2.4) BS01 rna ? GO:0003723 ... P12733 11483524
    15368 1jj2:O (2.4) BS01 rna ? GO:0003723 ... P14119 11483524
    15369 1jj2:P (2.4) BS01 rna ? GO:0003735 ... P12734 11483524
    15370 1jj2:P (2.4) BS02 rna ? GO:0003735 ... P12734 11483524
    15371 1jj2:Q (2.4) BS01 rna ? GO:0002181 ... P10970 11483524
    15372 1jj2:R (2.4) BS01 rna ? GO:0000027 ... P12732 11483524
    15373 1jj2:S (2.4) BS01 rna ? GO:0002181 ... P10972 11483524
    15374 1jj2:S (2.4) BS02 MG ? GO:0002181 ... P10972 11483524
    15375 1jj2:T (2.4) BS01 rna ? GO:0003735 ... P14116 11483524
    15376 1jj2:U (2.4) BS01 rna ? GO:0003735 ... P10971 11483524
    15377 1jj2:V (2.4) BS01 rna ? GO:0000463 ... P14121 11483524
    15378 1jj2:V (2.4) BS02 rna ? GO:0000463 ... P14121 11483524
    15379 1jj2:W (2.4) BS01 rna ? GO:0002181 ... P18138 11483524
    15380 1jj2:X (2.4) BS01 rna ? GO:0000166 ... P12736 11483524
    15381 1jj2:X (2.4) BS02 MG ? GO:0000166 ... P12736 11483524
    15382 1jj2:Y (2.4) BS01 rna ? GO:0003735 ... P60619 11483524
    15383 1jj2:Z (2.4) BS01 rna ? GO:0003723 ... P32410 11483524
    15384 1jj4:A (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    15385 1jj4:A (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    15386 1jj4:B (2.4) BS01 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    15387 1jj4:B (2.4) BS02 dna ? GO:0003677 ... P06790 10906136 PDBbind: Kd=1.6nM
    15388 1jj9:A (2.0) BS01 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    15389 1jj9:A (2.0) BS02 CA 3.4.24.34 GO:0004222 ... P22894 11278347
    15390 1jj9:A (2.0) BS03 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    15391 1jj9:A (2.0) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 11278347
    15392 1jj9:A (2.0) BS05 BBT 3.4.24.34 GO:0004222 ... P22894 11278347 MOAD: ic50=1700nM
    PDBbind: -logKd/Ki=5.77, IC50=1.7uM
    BindingDB: IC50=1700nM
    15393 1jjb:A (2.3) BS01 PE7 3.1.1.7 GO:0001507 ... P04058 12095250
    15394 1jjc:A (2.6) BS01 FA5 6.1.1.20 GO:0000049 ... Q5SGX2 11679717
    15395 1jjc:B (2.6) BS01 SO4 6.1.1.20 GO:0000049 ... Q5SGX1 11679717
    15396 1jje:A (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    15397 1jje:A (1.8) BS02 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    15398 1jje:A (1.8) BS03 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410
    15399 1jje:A (1.8) BS04 BYS 3.5.2.6 GO:0008270 ... Q79MP6 11390410 MOAD: ic50=0.0037uM
    PDBbind: -logKd/Ki=8.43, IC50=3.7nM
    15400 1jje:B (1.8) BS01 ZN 3.5.2.6 GO:0008270 ... Q79MP6 11390410

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218