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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    14601 1j70:C (2.3) BS01 PO4 2.7.7.4 GO:0000096 ... P08536 14983089
    14602 1j71:A (1.8) BS01 peptide 3.4.23.24 GO:0004190 ... Q00663 9335526
    14603 1j73:B (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    14604 1j73:D (2.0) BS01 peptide ? GO:0005179 ... P01308 11779231
    14605 1j78:B (2.31) BS01 VDY ? GO:0003779 ... P02774 11799400
    14606 1j79:A (1.7) BS01 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    14607 1j79:A (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    14608 1j79:A (1.7) BS03 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    14609 1j79:B (1.7) BS01 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    14610 1j79:B (1.7) BS02 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    14611 1j79:B (1.7) BS03 ZN 3.5.2.3 GO:0004151 ... P05020 11401542
    14612 1j79:B (1.7) BS04 NCD 3.5.2.3 GO:0004151 ... P05020 11401542
    14613 1j7e:A (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    14614 1j7e:B (2.55) BS01 JY ? GO:0003779 ... P02774 11799400
    14615 1j7j:A (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    14616 1j7j:B (2.3) BS01 MG 2.4.2.8 GO:0000166 ... O33799 N/A
    14617 1j7k:A (1.8) BS01 ATP 3.6.4.12 GO:0000400 ... Q56313 11478862
    14618 1j7n:A (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    14619 1j7n:B (2.3) BS01 ZN 3.4.24.83 GO:0003824 ... P15917 11700563
    14620 1j7s:A (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    14621 1j7s:B (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    14622 1j7s:C (2.2) BS01 HEM ? GO:0004601 ... P69905 11724557
    14623 1j7s:D (2.2) BS01 HEM ? GO:0004601 ... P68871 11724557
    14624 1j7w:A (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    14625 1j7w:B (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    14626 1j7w:C (2.0) BS01 HEM ? GO:0004601 ... P69905 11724557
    14627 1j7w:D (2.0) BS01 HEM ? GO:0004601 ... P68871 11724557
    14628 1j7y:A (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    14629 1j7y:B (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    14630 1j7y:C (1.7) BS01 HEM ? GO:0004601 ... P69905 11724557
    14631 1j7y:D (1.7) BS01 HEM ? GO:0004601 ... P68871 11724557
    14632 1j8a:A (1.21) BS01 CA 3.4.21.4 GO:0004175 ... P00760 N/A
    14633 1j8h:A (2.4) BS01 peptide ? GO:0006955 ... P01903 11877480
    14634 1j8h:B (2.4) BS01 peptide ? GO:0006955 ... P01911 11877480
    14635 1j8v:A (2.4) BS01 LAM 3.2.1.21 GO:0004553 ... Q9XEI3 12034895 MOAD: Ki=243.2uM
    14636 1j90:A (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    14637 1j90:B (2.56) BS01 DCZ 2.7.1.145 GO:0004136 ... Q9XZT6 11427893
    14638 1j91:A (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    14639 1j91:B (2.22) BS01 TBS 2.7.11.1 GO:0004672 ... P28523 11604527
    14640 1j96:A (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    14641 1j96:A (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    14642 1j96:B (1.25) BS01 NAP 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    14643 1j96:B (1.25) BS02 TES 1.-.-.-
    1.1.1.112
    1.1.1.209
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.3.1.20
    GO:0004032 ... P52895 11514561
    14644 1j97:A (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    14645 1j97:B (1.5) BS01 MG 3.1.3.3 GO:0000287 ... Q58989 11438683
    14646 1j97:B (1.5) BS02 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    14647 1j97:B (1.5) BS03 PO4 3.1.3.3 GO:0000287 ... Q58989 11438683
    14648 1j99:A (1.99) BS01 HGI 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    14649 1j99:A (1.99) BS02 HGI 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    14650 1j99:A (1.99) BS03 AND 2.8.2.14
    2.8.2.2
    GO:0004027 ... Q06520 11988089
    14651 1j9j:A (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    14652 1j9j:B (1.9) BS01 MG 3.1.3.5 GO:0000166 ... P96112 11524683
    14653 1j9k:A (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    14654 1j9k:A (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    14655 1j9k:B (2.1) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    14656 1j9k:B (2.1) BS02 WO4 3.1.3.5 GO:0000166 ... P96112 11524683
    14657 1j9l:A (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    14658 1j9l:A (1.9) BS02 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    14659 1j9l:A (1.9) BS03 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    14660 1j9l:B (1.9) BS01 CA 3.1.3.5 GO:0000166 ... P96112 11524683
    14661 1j9l:B (1.9) BS02 VO4 3.1.3.5 GO:0000166 ... P96112 11524683
    14662 1j9q:A (1.65) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14663 1j9q:A (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14664 1j9q:A (1.65) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14665 1j9q:A (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14666 1j9q:B (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14667 1j9q:B (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14668 1j9q:B (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14669 1j9q:B (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14670 1j9q:C (1.65) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14671 1j9q:C (1.65) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14672 1j9q:C (1.65) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14673 1j9q:C (1.65) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14674 1j9r:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14675 1j9r:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14676 1j9r:A (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14677 1j9r:A (2.0) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14678 1j9r:B (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14679 1j9r:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14680 1j9r:B (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14681 1j9r:B (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14682 1j9r:B (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14683 1j9r:C (2.0) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14684 1j9r:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14685 1j9r:C (2.0) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14686 1j9r:C (2.0) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14687 1j9r:C (2.0) BS05 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14688 1j9s:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14689 1j9s:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14690 1j9s:A (1.9) BS03 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14691 1j9s:A (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14692 1j9s:B (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14693 1j9s:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14694 1j9s:B (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14695 1j9s:B (1.9) BS04 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14696 1j9s:C (1.9) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14697 1j9s:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14698 1j9s:C (1.9) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14699 1j9t:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14700 1j9t:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14701 1j9t:A (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14702 1j9t:B (1.95) BS01 NO2 1.7.2.1 GO:0005507 ... P38501 11478880
    14703 1j9t:B (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14704 1j9t:B (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14705 1j9t:B (1.95) BS04 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14706 1j9t:C (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14707 1j9t:C (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14708 1j9t:C (1.95) BS03 CU 1.7.2.1 GO:0005507 ... P38501 11478880
    14709 1j9w:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    14710 1j9w:B (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00915 12009884
    14711 1j9z:A (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14712 1j9z:A (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    14713 1j9z:A (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14714 1j9z:B (2.7) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14715 1j9z:B (2.7) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    14716 1j9z:B (2.7) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14717 1ja0:A (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14718 1ja0:A (2.6) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    14719 1ja0:A (2.6) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14720 1ja0:B (2.6) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14721 1ja0:B (2.6) BS02 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14722 1ja1:A (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14723 1ja1:A (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    14724 1ja1:A (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14725 1ja1:B (1.8) BS01 FAD 1.6.2.4 GO:0003420 ... P00388 11371558
    14726 1ja1:B (1.8) BS02 FMN 1.6.2.4 GO:0003420 ... P00388 11371558
    14727 1ja1:B (1.8) BS03 NAP 1.6.2.4 GO:0003420 ... P00388 11371558
    14728 1jac:A (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    14729 1jac:A (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    14730 1jac:A (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    14731 1jac:C (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    14732 1jac:C (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    14733 1jac:C (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    14734 1jac:E (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    14735 1jac:E (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    14736 1jac:E (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    14737 1jac:G (2.43) BS01 peptide ? GO:0005575 ... P18670 8673603
    14738 1jac:G (2.43) BS02 peptide ? GO:0005575 ... P18670 8673603
    14739 1jac:G (2.43) BS03 AMG ? GO:0005575 ... P18670 8673603
    14740 1jae:A (1.65) BS01 CA 3.2.1.1 GO:0003824 ... P56634 9600843
    14741 1jae:A (1.65) BS02 CL 3.2.1.1 GO:0003824 ... P56634 9600843
    14742 1jaf:A (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    14743 1jaf:B (2.5) BS01 HEM ? GO:0005506 ... P00142 N/A
    14744 1jah:A (1.8) BS01 MG 3.6.5.2 GO:0003924 ... P01112 9102473
    14745 1jai:A (1.8) BS01 MN 3.6.5.2 GO:0003924 ... P01112 9102473
    14746 1jak:A (1.75) BS01 CL 3.2.1.52 GO:0004553 ... O85361 11522797
    14747 1jak:A (1.75) BS02 IFG 3.2.1.52 GO:0004553 ... O85361 11522797 MOAD: Ki=2.7uM
    PDBbind: -logKd/Ki=5.57, Ki=2.7uM
    14748 1jan:A (2.5) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8307185
    14749 1jan:A (2.5) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    14750 1jan:A (2.5) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8307185
    14751 1jan:A (2.5) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    14752 1jan:A (2.5) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8307185
    14753 1jao:A (2.4) BS01 0D3 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=1.2uM
    PDBbind: -logKd/Ki=5.92, Ki=1.2uM
    14754 1jao:A (2.4) BS02 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    14755 1jao:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    14756 1jao:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    14757 1jao:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    14758 1jap:A (1.82) BS01 peptide 3.4.24.34 GO:0004222 ... P22894 8137810
    14759 1jap:A (1.82) BS02 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    14760 1jap:A (1.82) BS03 CA 3.4.24.34 GO:0004222 ... P22894 8137810
    14761 1jap:A (1.82) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    14762 1jap:A (1.82) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 8137810
    14763 1jaq:A (2.4) BS01 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    14764 1jaq:A (2.4) BS02 01S 3.4.24.34 GO:0004222 ... P22894 7737183 MOAD: Ki=33uM
    PDBbind: -logKd/Ki=4.48, Ki=33uM
    BindingDB: Ki=121000nM
    14765 1jaq:A (2.4) BS03 CA 3.4.24.34 GO:0004222 ... P22894 7737183
    14766 1jaq:A (2.4) BS04 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    14767 1jaq:A (2.4) BS05 ZN 3.4.24.34 GO:0004222 ... P22894 7737183
    14768 1jaw:A (2.7) BS01 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    14769 1jaw:A (2.7) BS02 MN 3.4.11.9 GO:0004177 ... P15034 9520390
    14770 1jay:A (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    14771 1jay:A (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    14772 1jay:B (1.65) BS01 NAP 1.5.1.40 GO:0000166 ... O29370 11726492
    14773 1jay:B (1.65) BS02 F42 1.5.1.40 GO:0000166 ... O29370 11726492
    14774 1jaz:A (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    14775 1jaz:B (2.27) BS01 ZN 3.5.1.1 GO:0004067 ... P00805 25040257
    14776 1jb0:A (2.5) BS01 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14777 1jb0:A (2.5) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14778 1jb0:A (2.5) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14779 1jb0:A (2.5) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14780 1jb0:A (2.5) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14781 1jb0:A (2.5) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14782 1jb0:A (2.5) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14783 1jb0:A (2.5) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14784 1jb0:A (2.5) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14785 1jb0:A (2.5) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14786 1jb0:A (2.5) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14787 1jb0:A (2.5) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14788 1jb0:A (2.5) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14789 1jb0:A (2.5) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14790 1jb0:A (2.5) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14791 1jb0:A (2.5) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14792 1jb0:A (2.5) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14793 1jb0:A (2.5) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14794 1jb0:A (2.5) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14795 1jb0:A (2.5) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14796 1jb0:A (2.5) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14797 1jb0:A (2.5) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14798 1jb0:A (2.5) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14799 1jb0:A (2.5) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848
    14800 1jb0:A (2.5) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 11418848

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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